View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18857_high_14 (Length: 310)
Name: NF18857_high_14
Description: NF18857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18857_high_14 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 148 - 293
Target Start/End: Complemental strand, 6307913 - 6307768
Alignment:
| Q |
148 |
atataatcgtacgtggttcctactaaataggtattagtggaatggttcaaggaagttactaagtgatggccnnnnnnnnnnnnnnnnnnnnnngtatatg |
247 |
Q |
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| T |
6307913 |
atataatcgtacgtggttcctactaaataggtattagtggaatggttcaaggaagttactaagtgatggccagataaaaataaataaataaaagtatatg |
6307814 |
T |
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| Q |
248 |
gagaagtaataggaactgatcttaatccccgaagcatcctattcaa |
293 |
Q |
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| T |
6307813 |
gagaagtaataggaactgatcttaatccccgaagcatcctattcaa |
6307768 |
T |
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Target: scaffold0016 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 148
Target Start/End: Complemental strand, 107815 - 107776
Alignment:
| Q |
109 |
atagaataggaaaagtgctccctctaggtgttccacgaaa |
148 |
Q |
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| T |
107815 |
atagaataggaaaagtgctacctctaggtgttccacgaaa |
107776 |
T |
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