View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18857_high_16 (Length: 269)

Name: NF18857_high_16
Description: NF18857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18857_high_16
NF18857_high_16
[»] chr5 (16 HSPs)
chr5 (1-258)||(8644403-8644660)
chr5 (1-258)||(8678005-8678262)
chr5 (3-258)||(8637060-8637315)
chr5 (3-195)||(1600018-1600213)
chr5 (84-196)||(9074443-9074555)
chr5 (83-196)||(8529213-8529326)
chr5 (86-196)||(8547823-8547933)
chr5 (3-258)||(8641570-8641822)
chr5 (3-196)||(8535694-8535890)
chr5 (83-136)||(2904783-2904836)
chr5 (55-136)||(2844840-2844924)
chr5 (55-136)||(2856667-2856751)
chr5 (55-136)||(2874277-2874361)
chr5 (221-262)||(2856547-2856588)
chr5 (221-258)||(2874161-2874198)
chr5 (3-35)||(9003653-9003685)
[»] chr7 (3 HSPs)
chr7 (3-196)||(48361569-48361765)
chr7 (83-196)||(35780089-35780202)
chr7 (3-44)||(35780021-35780062)
[»] chr4 (1 HSPs)
chr4 (83-196)||(9443374-9443487)
[»] scaffold0627 (1 HSPs)
scaffold0627 (81-195)||(4942-5054)
[»] chr6 (1 HSPs)
chr6 (81-195)||(16716641-16716755)
[»] chr1 (1 HSPs)
chr1 (4-133)||(5130964-5131093)


Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 8644403 - 8644660
Alignment:
1 cgcaaatgtaaagtaatccccttaattctcccatgcgaatacgctcgttacgacgaaatccattattttgattttgaaacactggaggagaaggaaatga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
8644403 cgcaaatgtaaagtaatccccttaattctcccatgcgaatacgctcgttacgacgaaatccattattttgattttgaaacactggaggagaaggaaatga 8644502  T
101 ttgcaacctctcactttctaaacagaaacacaatatagacctttcttcatcctcaaatctgatccaatgaagcgcaccattaacataagtgggataatga 200  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
8644503 ttgcaacctctcactttcaaaacagaaacacaatatagacctttcttcatcctcaaatctgatccaatgaagcgcaccattaacataagtgggataatga 8644602  T
201 agattcaaacctgatccaatagaaatttgaggatctacttcagcatttctccatgatg 258  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
8644603 agactcaaacctgatccaatagaaatttgaggatctacttcagcatttctccatgatg 8644660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 8678005 - 8678262
Alignment:
1 cgcaaatgtaaagtaatccccttaattctcccatgcgaatacgctcgttacgacgaaatccattattttgattttgaaacactggaggagaaggaaatga 100  Q
    ||||||||||||||||||| ||||||| ||||||| ||||||||| ||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||    
8678005 cgcaaatgtaaagtaatcctcttaattttcccatgtgaatacgcttgttacaacgaaatccattattatgattttgaaatactggaggagaaggaaatga 8678104  T
101 ttgcaacctctcactttctaaacagaaacacaatatagacctttcttcatcctcaaatctgatccaatgaagcgcaccattaacataagtgggataatga 200  Q
    ||||||| ||||| |||||||||||||||||||||||||| |||||| | ||||||||| ||||||||||||||||||||||| | ||||||||||| |     
8678105 ttgcaacttctcagtttctaaacagaaacacaatatagacatttcttgaccctcaaatccgatccaatgaagcgcaccattaatacaagtgggataacgg 8678204  T
201 agattcaaacctgatccaatagaaatttgaggatctacttcagcatttctccatgatg 258  Q
    ||  ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||    
8678205 agcctcaaatctgatccaatagaaatttgaggatccacttcagcatttctccatgatg 8678262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 3 - 258
Target Start/End: Original strand, 8637060 - 8637315
Alignment:
3 caaatgtaaagtaatccccttaattctcccatgcgaatacgctcgttacgacgaaatccattattttgattttgaaacactggaggagaaggaaatgatt 102  Q
    ||||| ||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||    
8637060 caaatataaagtaatccccttaattctccaatgcgaatacactcgttatgacgaaatccattattttgattttgtaacactggaggagaaggaaatgatt 8637159  T
103 gcaacctctcactttctaaacagaaacacaatatagacctttcttcatcctcaaatctgatccaatgaagcgcaccattaacataagtgggataatgaag 202  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||| || |||||| ||| ||||||||||| ||||    
8637160 gcaacctctcattttctaaacagaaacacaatatagacctttcttgacccttaaatctgatccaatgaatcgtaccattcacacaagtgggataacgaag 8637259  T
203 attcaaacctgatccaatagaaatttgaggatctacttcagcatttctccatgatg 258  Q
        | |  |||||||||||||||||| ||||| ||||||||||||||||||||||    
8637260 ccatatatttgatccaatagaaatttggggatccacttcagcatttctccatgatg 8637315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 3 - 195
Target Start/End: Complemental strand, 1600213 - 1600018
Alignment:
3 caaatgtaaagtaatccccttaattctcccatgcgaatacgctcgttacgacgaaatccattattttgattttgaaacac---tggaggagaaggaaatg 99  Q
    ||||||||||| |||||| ||||||||||||||| || | |   ||||| || |  ||||||||| ||||||  |||| |   |||||||||||||||||    
1600213 caaatgtaaagaaatccctttaattctcccatgctaacatggctgttaccacaagttccattattatgatttccaaactcatgtggaggagaaggaaatg 1600114  T
100 attgcaacctctcactttctaaacagaaacacaatatagacctttcttcatcctcaaatctgatccaatgaagcgcaccattaacataagtgggat 195  Q
    | ||||||||||||||||| |||||||||  |||||| ||| |||  ||| ||||| |||| ||||||||||| |||||||| ||| |||||||||    
1600113 actgcaacctctcactttcaaaacagaaaaccaatattgacatttgctcaccctcatatcttatccaatgaagtgcaccattcacacaagtgggat 1600018  T

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Target: chr5; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 84 - 196
Target Start/End: Complemental strand, 9074555 - 9074443
Alignment:
84 ggaggagaaggaaatgattgcaacctctcactttctaaacagaaacacaatatagacctttcttcatcctcaaatctgatccaatgaagcgcaccattaa 183  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||| ||||||| |||||||  | ||  ||| |||| ||||||||||| |||||||| |    
9074555 ggaggagaaggaaatgactgcaacctctcactttcaaaacagaaaaacaatattgacctttgctgattttcatatcttatccaatgaagtgcaccattca 9074456  T
184 cataagtgggata 196  Q
    || ||||||||||    
9074455 cacaagtgggata 9074443  T

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Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 83 - 196
Target Start/End: Original strand, 8529213 - 8529326
Alignment:
83 tggaggagaaggaaatgattgcaacctctcactttctaaacagaaacacaatatagacctttcttcatcctcaaatctgatccaatgaagcgcaccatta 182  Q
    ||||||||||||||| || |||||||||||| |||| || ||||||  |||||| |||||||  | | |||||||||| ||||||||||| ||||||||     
8529213 tggaggagaaggaaacgactgcaacctctcattttcaaagcagaaaaccaatattgacctttgctgaccctcaaatcttatccaatgaagtgcaccattc 8529312  T
183 acataagtgggata 196  Q
    ||| ||||||||||    
8529313 acacaagtgggata 8529326  T

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Target: chr5; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 86 - 196
Target Start/End: Complemental strand, 8547933 - 8547823
Alignment:
86 aggagaaggaaatgattgcaacctctcactttctaaacagaaacacaatatagacctttcttcatcctcaaatctgatccaatgaagcgcaccattaaca 185  Q
    |||||||||||||||||| |||||||| ||||| ||||| |||||||||||||||| | |    |||| ||||| |||||||||||| |||| ||| |||    
8547933 aggagaaggaaatgattgaaacctctctctttcaaaacaaaaacacaatatagaccctcccctttccttaaatcggatccaatgaagtgcacgattcaca 8547834  T
186 taagtgggata 196  Q
     ||||||||||    
8547833 caagtgggata 8547823  T

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Target: chr5; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 258
Target Start/End: Original strand, 8641570 - 8641822
Alignment:
3 caaatgtaaagtaatccccttaattctcccatgcgaatacgctcgttacgacgaaatccattatttt---gattttgaaacac---tggaggagaaggaa 96  Q
    ||||||||| | |||||| |||| |||||||||| |||| ||  ||||| | ||| ||||||||| |   |||||  ||||||   ||||||||||||||    
8641570 caaatgtaaggaaatccctttaactctcccatgctaataagcctgttaccatgaattccattattattatgatttccaaacacatgtggaggagaaggaa 8641669  T
97 atgattgcaacctctcactttctaaacagaaacacaatatagacctttcttcatcctcaaatctgatccaatgaagcgcaccattaacataagtgggata 196  Q
    || | | ||| ||||||||||| ||||||||||| ||||| |||||||  ||  |||||||| |||| ||||||||  ||| ||| ||| ||||||||||    
8641670 ataacttcaatctctcactttccaaacagaaacataatattgacctttgctccccctcaaatttgattcaatgaagaacactattcacacaagtgggata 8641769  T
197 atgaagattcaaacctgatccaatagaaatttgaggatctacttcagcatttctccatgatg 258  Q
     | |||| || |         ||||||||| |||||||| |||||| |||||||||||||||    
8641770 cttaagactcga---------aatagaaatctgaggatccacttcaacatttctccatgatg 8641822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 196
Target Start/End: Original strand, 8535694 - 8535890
Alignment:
3 caaatgtaaagtaatccccttaattctcccatgcgaatacgctcgttacgacgaaatccattattttgattttgaaaca---ctggaggagaaggaaatg 99  Q
    ||||||||||| |||||| ||||||||||||||| |||| |    |||| | ||||||||||||| ||||||  |||||    |||||||||||||||||    
8535694 caaatgtaaagaaatccctttaattctcccatgctaatatgtctattactaagaaatccattattatgatttccaaacatctgtggaggagaaggaaatg 8535793  T
100 attgcaacctctcactttctaaacagaaacacaatatagacctttcttcatcctcaaatctgatccaatgaagcgcaccattaacataagtgggata 196  Q
    | | || | |||||||||| || ||||||  |||||| |||||||    | | |||||||| | |||||| || |||||||| ||| ||||||||||    
8535794 acttcagcgtctcactttcaaagcagaaaatcaatattgacctttgcagaccatcaaatcttagccaatgtagtgcaccattcacacaagtgggata 8535890  T

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Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 83 - 136
Target Start/End: Complemental strand, 2904836 - 2904783
Alignment:
83 tggaggagaaggaaatgattgcaacctctcactttctaaacagaaacacaatat 136  Q
    ||||||||||||||||||||||| |||||||||||| |||| ||||||||||||    
2904836 tggaggagaaggaaatgattgcatcctctcactttcaaaactgaaacacaatat 2904783  T

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Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 136
Target Start/End: Complemental strand, 2844924 - 2844840
Alignment:
55 gaaatccattattttgattttgaaacac---tggaggagaaggaaatgattgcaacctctcactttctaaacagaaacacaatat 136  Q
    ||||||||||||  ||||||  ||||||   ||||||||||||||| || ||||||||||||||||| |||  ||||||||||||    
2844924 gaaatccattatcatgatttccaaacacatgtggaggagaaggaaacgactgcaacctctcactttcaaaattgaaacacaatat 2844840  T

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Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 136
Target Start/End: Complemental strand, 2856751 - 2856667
Alignment:
55 gaaatccattattttgattttgaaacac---tggaggagaaggaaatgattgcaacctctcactttctaaacagaaacacaatat 136  Q
    ||||||||||||  ||||||  ||||||   ||||||||||||||| || ||||||||||||||||| |||  ||||||||||||    
2856751 gaaatccattatcatgatttccaaacacatgtggaggagaaggaaacgactgcaacctctcactttcaaaattgaaacacaatat 2856667  T

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Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 136
Target Start/End: Complemental strand, 2874361 - 2874277
Alignment:
55 gaaatccattattttgattttgaaacac---tggaggagaaggaaatgattgcaacctctcactttctaaacagaaacacaatat 136  Q
    ||||||||||||  ||||||  ||||||   ||||||||||||||| || ||||||||||||||||| |||  ||||||||||||    
2874361 gaaatccattatcatgatttccaaacacatgtggaggagaaggaaacgactgcaacctctcactttcaaaattgaaacacaatat 2874277  T

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Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 2856588 - 2856547
Alignment:
221 agaaatttgaggatctacttcagcatttctccatgatgatgt 262  Q
    ||||||||||||||| |||||| |||||||||||||||||||    
2856588 agaaatttgaggatccacttcaacatttctccatgatgatgt 2856547  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 221 - 258
Target Start/End: Complemental strand, 2874198 - 2874161
Alignment:
221 agaaatttgaggatctacttcagcatttctccatgatg 258  Q
    ||||||||||||||| |||||| |||||||||||||||    
2874198 agaaatttgaggatccacttcaacatttctccatgatg 2874161  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 9003653 - 9003685
Alignment:
3 caaatgtaaagtaatccccttaattctcccatg 35  Q
    ||||||||||| |||||||||||||||||||||    
9003653 caaatgtaaagaaatccccttaattctcccatg 9003685  T

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Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 3 - 196
Target Start/End: Complemental strand, 48361765 - 48361569
Alignment:
3 caaatgtaaagtaatccccttaattctcccatgcgaatacgctcgttacgacgaaatccattattttgattttgaaacac---tggaggagaaggaaatg 99  Q
    ||||||||||| |||||| ||||||||||||||| |||| ||  ||||| | ||| ||||||||| ||||||  ||||||   |||||||||||||||||    
48361765 caaatgtaaagaaatccctttaattctcccatgctaatatgcctgttaccaagaattccattattatgatttccaaacacatgtggaggagaaggaaatg 48361666  T
100 attgcaacctctcactttctaaacagaaacacaatatagacctttcttcatcctcaaatctgatccaatgaagcgcaccattaacataagtgggata 196  Q
    | |||| |||||||||||| ||||||||| ||||||| |||||||  | | |||||||||| ||||||||||| |||||||| ||| ||||||||||    
48361665 actgcaccctctcactttcaaaacagaaaaacaatattgacctttgctgaccctcaaatcttatccaatgaagtgcaccattcacacaagtgggata 48361569  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 83 - 196
Target Start/End: Original strand, 35780089 - 35780202
Alignment:
83 tggaggagaaggaaatgattgcaacctctcactttctaaacagaaacacaatatagacctttcttcatcctcaaatctgatccaatgaagcgcaccatta 182  Q
    |||||||||||||||||  ||||||||||||| ||| ||||| ||||| ||||| ||| ||| ||   |||||||| ||||||| |||||| |||||||     
35780089 tggaggagaaggaaatggctgcaacctctcaccttcaaaacaaaaacataatattgacttttgttgcccctcaaatttgatccagtgaagcacaccattc 35780188  T
183 acataagtgggata 196  Q
    ||| ||||||||||    
35780189 acacaagtgggata 35780202  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 35780021 - 35780062
Alignment:
3 caaatgtaaagtaatccccttaattctcccatgcgaatacgc 44  Q
    ||||||||||| |||||| ||||||||||||||| |||||||    
35780021 caaatgtaaagaaatccctttaattctcccatgctaatacgc 35780062  T

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Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 83 - 196
Target Start/End: Original strand, 9443374 - 9443487
Alignment:
83 tggaggagaaggaaatgattgcaacctctcactttctaaacagaaacacaatatagacctttcttcatcctcaaatctgatccaatgaagcgcaccatta 182  Q
    |||||||||||||||||| ||||||||||||||||| || ||||||  |||||| |||||||  |||||||||||||| ||||||||||| ||||||||     
9443374 tggaggagaaggaaatgactgcaacctctcactttcaaagcagaaaaccaatattgacctttgctcatcctcaaatcttatccaatgaagtgcaccattc 9443473  T
183 acataagtgggata 196  Q
    ||| ||||||||||    
9443474 acacaagtgggata 9443487  T

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Target: scaffold0627 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 81 - 195
Target Start/End: Original strand, 4942 - 5054
Alignment:
81 actggaggagaaggaaatgattgcaacctctcactttctaaacagaaacacaatatagacctttcttcatcctcaaatctgatccaatgaagcgcaccat 180  Q
    ||||| ||||| ||||||||||||||||||||||| || ||||| ||||||||||  ||| |||| |   |||||||||||||||||||||| |||||||    
4942 actgggggagagggaaatgattgcaacctctcactgtcaaaacaaaaacacaata--gacgtttcctttccctcaaatctgatccaatgaagtgcaccat 5039  T
181 taacataagtgggat 195  Q
    | ||| |||||||||    
5040 tcacacaagtgggat 5054  T

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Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 81 - 195
Target Start/End: Original strand, 16716641 - 16716755
Alignment:
81 actggaggagaaggaaatgattgcaacctctcactttctaaacagaaacacaatatagacctttcttcatcctcaaatctgatccaatgaagcgcaccat 180  Q
    ||||| |||||||||||||| |||||| |||||||||| ||||| ||||||||||||||| ||||     |||||||| ||| ||||||||| |||||||    
16716641 actgggggagaaggaaatgaatgcaacttctcactttcaaaacaaaaacacaatatagacatttcccttccctcaaatgtgaaccaatgaagtgcaccat 16716740  T
181 taacataagtgggat 195  Q
    | ||| |||||||||    
16716741 tcacacaagtgggat 16716755  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 5130964 - 5131093
Alignment:
4 aaatgtaaagtaatccccttaattctcccatgcgaatacgctcgttacgacgaaatccattattttgattttgaaacac---tggaggagaaggaaatga 100  Q
    |||||||||| |||||| |||||||||||||||  ||| ||||| | | |  |||  ||||||   |||||| ||||||   |||||||||||| |||||    
5130964 aaatgtaaagaaatccctttaattctcccatgccgatatgctcggtgccataaaaatcattat---gattttcaaacacgtgtggaggagaagggaatga 5131060  T
101 ttgcaacctctcactttctaaacagaaacacaa 133  Q
    |||||| ||||||||||| |||| |||||||||    
5131061 ttgcaatctctcactttcaaaactgaaacacaa 5131093  T

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