View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18857_high_20 (Length: 243)
Name: NF18857_high_20
Description: NF18857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18857_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 14965288 - 14965420
Alignment:
| Q |
1 |
agaatttcacaaatgcacacatttgaaactacttagagaaaatgacgtgatgaacaatctatcatgttgacgattgtgtaattctgagattagctagcca |
100 |
Q |
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| T |
14965288 |
agaatttcataaatgcacacatttgaaactacttagagaaaacgacgtgatgaacaatctatcatgttgacgattgtgtaattctgagattagctagtca |
14965387 |
T |
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| Q |
101 |
tttgaatcaaatttcttcattaattagctcgtg |
133 |
Q |
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| T |
14965388 |
tttgaatcaaatttcttcattaattagctcgtg |
14965420 |
T |
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Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 151 - 214
Target Start/End: Original strand, 14965410 - 14965473
Alignment:
| Q |
151 |
attagctcgtgtttaggccaacacacttctttatttgttacaaatgcttattatagcatgcttt |
214 |
Q |
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| T |
14965410 |
attagctcgtgtttaggccaacacacttctttatttgttacaaatgcttattatagcatgcttt |
14965473 |
T |
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