View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18857_high_6 (Length: 489)
Name: NF18857_high_6
Description: NF18857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18857_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 368; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 37008618 - 37008989
Alignment:
| Q |
1 |
ggcatgtagtacaatcttagaattgtttacatacatgtcacaatctaagtttagcataaagggagcatttgtcatcaatccagagactcttgtctgtata |
100 |
Q |
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| T |
37008618 |
ggcatgtagtacaatcttagaattgttcacatacatgtcacaatctaagtttagcataaagggagcatttgtcatcaatccagagactcttgtctgtata |
37008717 |
T |
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| Q |
101 |
caatacacattatgagaacttttgaatcgaaattaaggaaacacattgccttattacaatgttgtaatgaaagattaacaattcaaggagttgattgaag |
200 |
Q |
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| T |
37008718 |
caatacacattatgagaacttttgaatcgaaattaaggaaacacattgccttattacaatgttgtaatgaaagattaacaattcaaggagttgattgaag |
37008817 |
T |
|
| Q |
201 |
aaatataaatgttaccaagacattcattgcaccagctttgtgatgatgtggttgttttggcctcttctctctagatatgtagattatgtgaggcatcaca |
300 |
Q |
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| T |
37008818 |
aaatataaatgttaccaagacattcattgcaccagctttgtgatgatgtggttgttttggcctcttctctctagatatgtagattatgtgaggcatcaca |
37008917 |
T |
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| Q |
301 |
tcagaaatacctttgttttctcgaattacctatcaatatatgaagtaaaacatttgatgataataaaactaa |
372 |
Q |
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| T |
37008918 |
tcagaaatacctttgttttctcgaattacctatcaatatatgaagtaaaacatttgatgataataaaactaa |
37008989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 373 - 461
Target Start/End: Original strand, 37009734 - 37009822
Alignment:
| Q |
373 |
ttaaggactcatcatttatatatcgtgtagcagatagnnnnnnnctttgataaaatattgtgacacatctaaatgataaaatataatta |
461 |
Q |
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| T |
37009734 |
ttaaggactcatcatttatatatcgtgtagcagatagtttttttctttgataaaatattgtgacacatctaaatgataaaatataatta |
37009822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 12 - 97
Target Start/End: Original strand, 37025811 - 37025896
Alignment:
| Q |
12 |
caatcttagaattgtttacatacatgtcacaatctaagtttagcataaagggagcatttgtcatcaatccagagactcttgtctgt |
97 |
Q |
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| T |
37025811 |
caatcttaggattgttcacgtgcatgtcacaatctaagttcaatatgaaaggagcatttgtcatcattccagagactcttgtctgt |
37025896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 96
Target Start/End: Original strand, 37044809 - 37044892
Alignment:
| Q |
13 |
aatcttagaattgtttacatacatgtcacaatctaagtttagcataaagggagcatttgtcatcaatccagagactcttgtctg |
96 |
Q |
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| T |
37044809 |
aatcttgggattgttcacaaccatgtcacagtctacgttcaacataaaaggagcattggtcatcaatccagagactcttgtctg |
37044892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 256 - 295
Target Start/End: Original strand, 37035762 - 37035801
Alignment:
| Q |
256 |
tttggcctcttctctctagatatgtagattatgtgaggca |
295 |
Q |
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| T |
37035762 |
tttggcctcttctctctagatatgtagattaagtgaggca |
37035801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 295
Target Start/End: Original strand, 37026237 - 37026267
Alignment:
| Q |
265 |
ttctctctagatatgtagattatgtgaggca |
295 |
Q |
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| T |
37026237 |
ttctctctagatatgtagattatgtgaggca |
37026267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 212 - 284
Target Start/End: Complemental strand, 17657564 - 17657492
Alignment:
| Q |
212 |
ttaccaagacattcattgcaccagctttgtgatgatgtggttgttttggcctcttctctctagatatgtagat |
284 |
Q |
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| T |
17657564 |
ttaccaacacattcatggcaccggctttgaaatgatgtggttgctttggcctcttctctctagatatgtagat |
17657492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 17657721 - 17657647
Alignment:
| Q |
22 |
attgtttacatacatgtcacaatctaagtttagcataaagggagcatttgtcatcaatccagagactcttgtctg |
96 |
Q |
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| T |
17657721 |
attgtttacaaacatgtcacaatccacgttcaacatgaagggtgcattggtaatcaacccagagactcttgtctg |
17657647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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