View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18857_high_7 (Length: 427)
Name: NF18857_high_7
Description: NF18857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18857_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 13 - 411
Target Start/End: Original strand, 12852056 - 12852453
Alignment:
| Q |
13 |
aaaatacgaggcataataaaccttgagtatgtcgtccaagccaagagtcttagaactttttccaaaaccctaattgttgatgttgtcgatcaaaagctct |
112 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
12852056 |
aaaatacgaggcataataaaccttgaggatgtagtccaagccaagagtcttagaactttttccaaaaccctaattgttattgttgtcgatcgaaagctct |
12852155 |
T |
|
| Q |
113 |
aattgataaatgtgtgttaactcttggnnnnnnn-atagacaaatgtatgttataggttaatttgtacggttcgagaggaatgtgttaaagcaacatcaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12852156 |
aattgataaatgtgtgttaactcttgattttttttatagacaaatgtatgttataggttaatttgtacggttcgagaggaatgtgttaaagcaacatcaa |
12852255 |
T |
|
| Q |
212 |
tcgaactttgaacttccttcttaatactcttaacgtctcaatccataccattgtactacgccttagaagactaacacatttgttattttgatggatatat |
311 |
Q |
| |
|
|||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || |
|
|
| T |
12852256 |
tcgaactttgaacttccttcttaatactttcaatgtctcaatccataccattgtactacgccttagaagacta--acatttgttattttgatgaataaat |
12852353 |
T |
|
| Q |
312 |
ttttgaactctttctataaactaacatttgttattttcgacggtttgaagcaggaagaaggatgggttgtatgtagagtattcaagaagagagtaacaac |
411 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
12852354 |
ttttttactctttctataaactaacatttgttattttctatggtttggagcaggaagaaggatgggttgtatgtagagtattcaagaaaagagtaacaac |
12852453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 361 - 403
Target Start/End: Complemental strand, 42045864 - 42045822
Alignment:
| Q |
361 |
gcaggaagaaggatgggttgtatgtagagtattcaagaagaga |
403 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
42045864 |
gcaggaagaaggatgggttgtatgcagagtattcaagaagaga |
42045822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University