View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18857_high_8 (Length: 416)
Name: NF18857_high_8
Description: NF18857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18857_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 2e-96; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 218 - 400
Target Start/End: Original strand, 33343422 - 33343604
Alignment:
| Q |
218 |
ggaagtagttataatctcatttaggacgcaaagaactaattagtagtgtcggttgtcattatatatacatccaaacatacttatcaactaagttgtatta |
317 |
Q |
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| T |
33343422 |
ggaagtagttataatctcatttaggacgcaaagcactaattagtagtgtcggttgtcattatatatacatccaaacatacttatcaactaagttgtatta |
33343521 |
T |
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| Q |
318 |
tacagtgataaaaaattgtctcactcaatccagctaagcacacatataattacctcataaattatactaattaagttaaatta |
400 |
Q |
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| T |
33343522 |
tacagtgataaaaaattgtctcactcaatccagctaagcacacatataattacctcataaattatactaattaagttaaatta |
33343604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 33343223 - 33343279
Alignment:
| Q |
13 |
aatattcaaataaaaaagtgagaaagttaacaaggtcttgttgaaaacaatttaaag |
69 |
Q |
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| T |
33343223 |
aatattcaaataaaaaagtgagaaagttaacaaggtcttgttgaaaacagtttaaag |
33343279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 137
Target Start/End: Original strand, 33343303 - 33343340
Alignment:
| Q |
100 |
gcaaaggtgaagaaatttaggttataatatacatcaac |
137 |
Q |
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| T |
33343303 |
gcaaaggtgaagaaatttaggttataatatacatcaac |
33343340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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