View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18857_low_1 (Length: 932)

Name: NF18857_low_1
Description: NF18857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18857_low_1
NF18857_low_1
[»] chr6 (19 HSPs)
chr6 (17-484)||(28524915-28525384)
chr6 (17-482)||(28246037-28246512)
chr6 (17-482)||(28328279-28328748)
chr6 (17-482)||(28505915-28506384)
chr6 (593-803)||(28525484-28525694)
chr6 (273-482)||(28239325-28239534)
chr6 (17-482)||(28191082-28191557)
chr6 (17-261)||(28239056-28239300)
chr6 (660-800)||(28246696-28246836)
chr6 (658-800)||(28191730-28191872)
chr6 (657-800)||(28239703-28239846)
chr6 (655-798)||(28328927-28329070)
chr6 (655-798)||(28506563-28506706)
chr6 (69-197)||(28142369-28142497)
chr6 (318-459)||(28095445-28095586)
chr6 (329-467)||(2170620-2170758)
chr6 (423-457)||(27217601-27217635)
chr6 (595-629)||(28328864-28328898)
chr6 (595-629)||(28506500-28506534)
[»] scaffold0038 (5 HSPs)
scaffold0038 (17-482)||(46199-46674)
scaffold0038 (273-482)||(39487-39696)
scaffold0038 (17-261)||(39218-39462)
scaffold0038 (660-800)||(46858-46998)
scaffold0038 (657-800)||(39865-40008)
[»] scaffold0019 (2 HSPs)
scaffold0019 (25-482)||(55256-55723)
scaffold0019 (657-800)||(54935-55078)
[»] scaffold0286 (1 HSPs)
scaffold0286 (329-467)||(12503-12641)


Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-159; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 17 - 484
Target Start/End: Original strand, 28524915 - 28525384
Alignment:
Q  17 gtcagctgaatttcttccaatagttgtcatgtggtccgccaatgtgaaattgttagccctaacaggaagtaattttacaattcttccagaatgcatcaaa 116  Q
    ||||| ||| |||||||||||| ||||||||||||| || ||||||||| | |||| |||| |||||| |||||| ||||||||||||||||||||||||    
T  28524915 gtcagatgattttcttccaatacttgtcatgtggtctgctaatgtgaaaatattagacctatcaggaaataatttcacaattcttccagaatgcatcaaa 28525014  T
Q  117 gattgtcactttttaacagatcttgaattgaataattgcaagtgccttagagaaattagaggggtgccgccaaatttaaaatggttgtctgcaaaaggct 216  Q
    |||| ||| ||||||   | ||||  |||| || ||||||||||||||||||||||||||||| ||||||||||||||  ||  |||||||||| |||||    
T  28525015 gattttcagtttttatatgctcttatattggatgattgcaagtgccttagagaaattagagggatgccgccaaatttagcatacttgtctgcaataggct 28525114  T
Q  217 gcgaatccttgacttcctcggccagaaacatgctattgaatcaggnnnnnnnnnn--cccttgtatttgacttaatattttataagattgtttactctat 314  Q
    || ||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||    
T  28525115 gcaaatccttgacttcctcggccagaaacatgctattgaatcaggtttttttttttccccttgtatttgacttaatattttataagattgtttactctat 28525214  T
Q  315 gatttatttatggctaacaggaactgcatgagggtggagaaaccaagttttgtttgcctggatttgcaaggattccagagtggtttgatcgccaaaacat 414  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  28525215 gatttatttatggctaacaggaactgcatgaggctggaggaaccaggttttgtttgccaggatttgcaaggattccagagtggtttgatcaccaaaacat 28525314  T
Q  415 gggacatacaatttctttttggttccgtaacaacctcccttccatggctctctgtttttctactaaatta 484  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||    
T  28525315 gggacatacaatttctttttggtttcgtaacaacctcccttccattgctctctgtttttctaataaatta 28525384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 482
Target Start/End: Original strand, 28246037 - 28246512
Alignment:
Q  17 gtcagctgaatttcttccaatagttgtcatgtggtccgccaatgtgaaattgttagccctaacaggaagtaattttacaattcttccagaatgcatcaaa 116  Q
    ||||| |||||||||||||||||||||||||||||| || |||||  |||| |||  |||| ||| ||  ||||| ||||||||||||||||||||||||    
T  28246037 gtcagatgaatttcttccaatagttgtcatgtggtctgcgaatgtagaatttttaaacctatcagaaaacaatttcacaattcttccagaatgcatcaaa 28246136  T
Q  117 gattgtcactttttaacagatcttgaattgaataattgcaagtgccttagagaaattagaggggtgccgccaaatttaaaatggttgtctgcaaaaggct 216  Q
    ||||||| |||||||     ||||   ||| || ||||||||||||||||||||||||||||| | || ||||||||||||   |||||||||| | |||    
T  28246137 gattgtcgctttttatggtctcttaggttggatgattgcaagtgccttagagaaattagagggattccaccaaatttaaaacacttgtctgcaatacgct 28246236  T
Q  217 gcgaatccttgacttcctcggccagaaacatgctattgaatcaggnnnnnnnnnnc----------ccttgtatttgacttaatattttataagattgtt 306  Q
    || |||| ||||||||||||  || ||||||||||||||||||||                     ||||||||||||||||||||| ||||| ||||||    
T  28246237 gcaaatcattgacttcctcgtgcaaaaacatgctattgaatcaggttttgttttgtttattgttttccttgtatttgacttaatattatataatattgtt 28246336  T
Q  307 tactctatgatttatttatggctaacaggaactgcatgagggtggagaaaccaagttttgtttgcctggatttgcaaggattccagagtggtttgatcgc 406  Q
    ||||| |||| |||||||||||||||||||||||||||||| ||||| |||||| ||||||||  | |||||||||||||||||||| |||||||||| |    
T  28246337 tactcaatgaattatttatggctaacaggaactgcatgaggctggaggaaccaaattttgtttttcaggatttgcaaggattccagattggtttgatcac 28246436  T
Q  407 caaaacatgggacatacaatttctttttggttccgtaacaacctcccttccatggctctctgtttttctactaaat 482  Q
    |||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  28246437 caaagcatgggacatacaatttctttttggtttcgtaacaagctcccttccatggctctctgtttttctactaaat 28246512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 482
Target Start/End: Original strand, 28328279 - 28328748
Alignment:
Q  17 gtcagctgaatttcttccaatagttgtcatgtggtccgccaatgtgaaattgttagccctaacaggaagtaattttacaattcttccagaatgcatcaaa 116  Q
    ||||| |||||||||||||||| ||||||||||||| || |||||| || | |||| |||| |||||| || ||| ||||||||||||||||||||||||    
T  28328279 gtcagatgaatttcttccaatacttgtcatgtggtctgctaatgtggaaatattagacctatcaggaaatagtttcacaattcttccagaatgcatcaaa 28328378  T
Q  117 gattgtcactttttaacagatcttgaattgaataattgcaagtgccttagagaaattagaggggtgccgccaaatttaaaatggttgtctgcaaaaggct 216  Q
    ||||||| ||||||  |  | |||  |||| || |||||||||||||| |||||||||||||| | || |||||||||||||  |||||||||||| |||    
T  28328379 gattgtcgctttttgtcgaagcttacattggatgattgcaagtgccttcgagaaattagagggattccaccaaatttaaaatatttgtctgcaaaatgct 28328478  T
Q  217 gcgaatccttgacttcctcggccagaaacatgctattgaatcaggnnnnnnnnnnc----ccttgtatttgacttaatattttataagattgtttactct 312  Q
    || |||| ||||||||||||  || ||||||||||||||||||||               ||||||||||||||||||||||||||||||||||||||||    
T  28328479 gcaaatcattgacttcctcgtgcaaaaacatgctattgaatcaggttttgtgtttttattccttgtatttgacttaatattttataagattgtttactct 28328578  T
Q  313 atgatttatttatggctaacaggaactgcatgagggtggagaaaccaagttttgtttgcctggatttgcaaggattccagagtggtttgatcgccaaaac 412  Q
    || | || | ||||| |||||||||||||| |||| |||||| || || ||||||||  | ||||||||||  ||||||||||||||||| | ||||||     
T  28328579 atcaattctatatggttaacaggaactgcacgaggctggagatacaaaattttgtttttcaggatttgcaaaaattccagagtggtttgagcaccaaaat 28328678  T
Q  413 atgggacatacaatttctttttggttccgtaacaacctcccttccatggctctctgtttttctactaaat 482  Q
    |||||| ||||||||||||||||||| |||||||| |  |||||||||||||||||| ||||||||||||    
T  28328679 atgggaaatacaatttctttttggtttcgtaacaagcatccttccatggctctctgtatttctactaaat 28328748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 482
Target Start/End: Original strand, 28505915 - 28506384
Alignment:
Q  17 gtcagctgaatttcttccaatagttgtcatgtggtccgccaatgtgaaattgttagccctaacaggaagtaattttacaattcttccagaatgcatcaaa 116  Q
    ||||| |||||||||||||||| ||||||||||||| || |||||| || | |||| |||| |||||| || ||| ||||||||||||||||||||||||    
T  28505915 gtcagatgaatttcttccaatacttgtcatgtggtctgctaatgtggaaatattagacctatcaggaaatagtttcacaattcttccagaatgcatcaaa 28506014  T
Q  117 gattgtcactttttaacagatcttgaattgaataattgcaagtgccttagagaaattagaggggtgccgccaaatttaaaatggttgtctgcaaaaggct 216  Q
    ||||||| ||||||  |  | |||  |||| || |||||||||||||| |||||||||||||| | || |||||||||||||  |||||||||||| |||    
T  28506015 gattgtcgctttttgtcgaagcttacattggatgattgcaagtgccttcgagaaattagagggattccaccaaatttaaaatatttgtctgcaaaatgct 28506114  T
Q  217 gcgaatccttgacttcctcggccagaaacatgctattgaatcaggnnnnnnnnnnc----ccttgtatttgacttaatattttataagattgtttactct 312  Q
    || |||| ||||||||||||  || ||||||||||||||||||||               ||||||||||||||||||||||||||||||||||||||||    
T  28506115 gcaaatcattgacttcctcgtgcaaaaacatgctattgaatcaggttttgtgtttttattccttgtatttgacttaatattttataagattgtttactct 28506214  T
Q  313 atgatttatttatggctaacaggaactgcatgagggtggagaaaccaagttttgtttgcctggatttgcaaggattccagagtggtttgatcgccaaaac 412  Q
    || | || | ||||| |||||||||||||| |||| |||||| || || ||||||||  | ||||||||||  ||||||||||||||||| | ||||||     
T  28506215 atcaattctatatggttaacaggaactgcacgaggctggagatacaaaattttgtttttcaggatttgcaaaaattccagagtggtttgagcaccaaaat 28506314  T
Q  413 atgggacatacaatttctttttggttccgtaacaacctcccttccatggctctctgtttttctactaaat 482  Q
    |||||| ||||||||||||||||||| |||||||| |  |||||||||||||||||| ||||||||||||    
T  28506315 atgggaaatacaatttctttttggtttcgtaacaagcatccttccatggctctctgtatttctactaaat 28506384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 593 - 803
Target Start/End: Original strand, 28525484 - 28525694
Alignment:
Q  593 catcatcatacatatttgtatgatatggagctggaatattgtttagacatggacaatgaatattttttagaaaatgactggaatcatgcagagattatat 692  Q
    |||||| |||||| ||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28525484 catcatgatacatgtttgtatgatatgcagctggaatcttttttagacatggacaatgaatattttttagaaaatgactggaatcatgcagagattatat 28525583  T
Q  693 gtgaacatcagaaggtggaaccaataacagaaattggaatccattttttcaaacagaaaaataacatggatgatattcaattcaccaatccttatgaaaa 792  Q
    |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28525584 gtgaacatcagttagtggaaccaataacagaaattggaatccattttttcaaacagaaaaataacatggatgatattcaattcaccaatccttatgaaaa 28525683  T
Q  793 gataaaatcaa 803  Q
    |||||||||||    
T  28525684 gataaaatcaa 28525694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 150; E-Value: 8e-79
Query Start/End: Original strand, 273 - 482
Target Start/End: Original strand, 28239325 - 28239534
Alignment:
Q  273 ccttgtatttgacttaatattttataagattgtttactctatgatttatttatggctaacaggaactgcatgagggtggagaaaccaagttttgtttgcc 372  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||  ||||||||  |    
T  28239325 ccttgtatttgtcttaatattttataagattgtttactctatgaattatttatggctaacaggaactgcatgaggctggaggaaccatattttgtttttc 28239424  T
Q  373 tggatttgcaaggattccagagtggtttgatcgccaaaacatgggacatacaatttctttttggttccgtaacaacctcccttccatggctctctgtttt 472  Q
     |||||||  ||||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  28239425 aggatttgtgaggattccagagtggtttgatcatcaaaacatgggacatacaatttctttttggtttcgtaacaagctcccttccatggctctctgtttt 28239524  T
Q  473 tctactaaat 482  Q
    ||||||||||    
T  28239525 tctactaaat 28239534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 17 - 482
Target Start/End: Original strand, 28191082 - 28191557
Alignment:
Q  17 gtcagctgaatttcttccaatagttgtcatgtggtccgccaatgtgaaattgttagccctaacaggaagtaattttacaattcttccagaatgcatcaaa 116  Q
    ||||| |||||||||||||||| ||||||||||||| ||  | |||| | | |||| |||| |||||| |||||| ||||||||||||||||||||||||    
T  28191082 gtcagatgaatttcttccaatatttgtcatgtggtctgcttacgtgagaatcttagacctatcaggaaataatttcacaattcttccagaatgcatcaaa 28191181  T
Q  117 gattgtcactttttaacagatcttgaattgaataattgcaagtgccttagagaaattagaggggtgccgccaaatttaaaatggttgtctgcaaaaggct 216  Q
    ||||||||| ||||| | ||||||  |||| || ||||||||||||||||||||||||||||| | || | |||||||| |   |||||||||  |  ||    
T  28191182 gattgtcaccttttatcggatcttatattggatgattgcaagtgccttagagaaattagagggattccactaaatttaacaaacttgtctgcagcaaact 28191281  T
Q  217 gcgaatccttgacttcctcggccagaaacatgctattgaatcagg-----------nnnnnnnnnncccttgtatttgacttaatattttataagattgt 305  Q
    || |||| ||||||||||||   ||||||||||||||||||||||                      |||||||||| ||||||||||     | |||||    
T  28191282 gcaaatcattgacttcctcgtgtagaaacatgctattgaatcaggttttgttttattcttttgttttccttgtatttcacttaatatt-----atattgt 28191376  T
Q  306 ttactcta----tgatttatttatggctaacaggaactgcatgagggtggagaaaccaagttttgtttgcctggatttgcaaggattccagagtggtttg 401  Q
    ||||||||    ||||||||| ||||||||||||| || ||||||| ||||| ||   | |||| |||||| ||||||||||||||||||||||||||||    
T  28191377 ttactctatatatgatttattaatggctaacaggatcttcatgaggctggaggaaaagaattttatttgccaggatttgcaaggattccagagtggtttg 28191476  T
Q  402 atcgccaaaacatgggacatacaatttctttttggttccgtaacaacctcccttccatggctctctgtttttctactaaat 482  Q
    ||| || |||||||||||||| | ||||||||||||| |||||||| ||||||||| | ||| ||||||||||||||||||    
T  28191477 atcaccgaaacatgggacataaattttctttttggtttcgtaacaagctcccttcctttgctatctgtttttctactaaat 28191557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 17 - 261
Target Start/End: Original strand, 28239056 - 28239300
Alignment:
Q  17 gtcagctgaatttcttccaatagttgtcatgtggtccgccaatgtgaaattgttagccctaacaggaagtaattttacaattcttccagaatgcatcaaa 116  Q
    ||||| |||||||||||||||| ||||||||||||| || ||||||  |  ||||| |||| |||||| |||||| ||||||||||||||||||||||||    
T  28239056 gtcagatgaatttcttccaataattgtcatgtggtctgctaatgtgtcaaagttagacctatcaggaaataatttcacaattcttccagaatgcatcaaa 28239155  T
Q  117 gattgtcactttttaacagatcttgaattgaataattgcaagtgccttagagaaattagaggggtgccgccaaatttaaaatggttgtctgcaaaaggct 216  Q
    ||||||| ||||||||| ||||||  |||| || ||||||| ||||||||||||||||||||| | || ||||||||||||   ||||||||||||  ||    
T  28239156 gattgtcgctttttaacggatcttatattggatgattgcaaatgccttagagaaattagagggattccaccaaatttaaaacacttgtctgcaaaatact 28239255  T
Q  217 gcgaatccttgacttcctcggccagaaacatgctattgaatcagg 261  Q
    || |||| |||| ||||||||||||||||||||||||||||||||    
T  28239256 gcaaatcattgatttcctcggccagaaacatgctattgaatcagg 28239300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 660 - 800
Target Start/End: Original strand, 28246696 - 28246836
Alignment:
Q  660 tagaaaatgactggaatcatgcagagattatatgtgaacatcagaaggtggaaccaataacagaaattggaatccattttttcaaacagaaaaataacat 759  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| || ||||||||||    
T  28246696 tagaaaatgagtggaatcatgcagagattatatgtgaacatcaggaggtggaaccaataacagaaattggaatccatttttacaaagagcaaaataacat 28246795  T
Q  760 ggatgatattcaattcaccaatccttatgaaaagataaaat 800  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  28246796 ggatgatattcaattcaccaatccttatgaaaagataaaat 28246836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 658 - 800
Target Start/End: Original strand, 28191730 - 28191872
Alignment:
Q  658 tttagaaaatgactggaatcatgcagagattatatgtgaacatcagaaggtggaaccaataacagaaattggaatccattttttcaaacagaaaaataac 757  Q
    |||||||||||| ||||||||||||||| ||| || |||||||| ||  ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28191730 tttagaaaatgaatggaatcatgcagaggttacatatgaacatccgagagtggaaccactaacagaaattggaatccattttttcaaacagaaaaataac 28191829  T
Q  758 atggatgatattcaattcaccaatccttatgaaaagataaaat 800  Q
    ||||||||||||||||||||| |||||||| ||| ||||||||    
T  28191830 atggatgatattcaattcaccgatccttataaaaggataaaat 28191872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 657 - 800
Target Start/End: Original strand, 28239703 - 28239846
Alignment:
Q  657 ttttagaaaatgactggaatcatgcagagattatatgtgaacatcagaaggtggaaccaataacagaaattggaatccattttttcaaacagaaaaataa 756  Q
    ||||| ||||||| ||||||||||||||| |||||| |||||||   || ||||||||| |||||||||||||||||||||||||||||||  |||||||    
T  28239703 ttttaaaaaatgaatggaatcatgcagaggttatatttgaacattcaaatgtggaaccactaacagaaattggaatccattttttcaaacacgaaaataa 28239802  T
Q  757 catggatgatattcaattcaccaatccttatgaaaagataaaat 800  Q
    ||||||||| |||||||||||||||||||| |||| | ||||||    
T  28239803 catggatgacattcaattcaccaatccttaagaaaggttaaaat 28239846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 655 - 798
Target Start/End: Original strand, 28328927 - 28329070
Alignment:
Q  655 ttttttagaaaatgactggaatcatgcagagattatatgtgaacatcagaaggtggaaccaataacagaaattggaatccattttttcaaacagaaaaat 754  Q
    |||||||| |||||| |||| |||||||||| ||| ||| ||||||| |  ||| |||||| |||||||| |||||||||||||||||||||||||||||    
T  28328927 ttttttagtaaatgaatggattcatgcagaggttagatgggaacatcggggggttgaaccactaacagaatttggaatccattttttcaaacagaaaaat 28329026  T
Q  755 aacatggatgatattcaattcaccaatccttatgaaaagataaa 798  Q
    |||||||| || ||| |||||||| |||||||||||||||||||    
T  28329027 aacatggaggacattaaattcaccgatccttatgaaaagataaa 28329070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 655 - 798
Target Start/End: Original strand, 28506563 - 28506706
Alignment:
Q  655 ttttttagaaaatgactggaatcatgcagagattatatgtgaacatcagaaggtggaaccaataacagaaattggaatccattttttcaaacagaaaaat 754  Q
    |||||||| |||||| |||| |||||||||| ||| ||| ||||||| |  ||| |||||| |||||||| |||||||||||||||||||||||||||||    
T  28506563 ttttttagtaaatgaatggattcatgcagaggttagatgggaacatcggggggttgaaccactaacagaatttggaatccattttttcaaacagaaaaat 28506662  T
Q  755 aacatggatgatattcaattcaccaatccttatgaaaagataaa 798  Q
    |||||||| || ||| |||||||| |||||||||||||||||||    
T  28506663 aacatggaggacattaaattcaccgatccttatgaaaagataaa 28506706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 197
Target Start/End: Original strand, 28142369 - 28142497
Alignment:
Q  69 ttagccctaacaggaagtaattttacaattcttccagaatgcatcaaagattgtcactttttaacaga-tcttgaattgaataattgcaagtgccttaga 167  Q
    |||| |||| |||| |||||||||||||| ||||| |||||| ||||||| ||  ||||||| |||||  ||||||||| ||||||| ||||  |||  |    
T  28142369 ttagtcctatcagggagtaattttacaatccttccggaatgcctcaaagaatgcaacttttt-acagagccttgaattggataattgtaagtctcttcaa 28142467  T
Q  168 gaaattagaggggtgccgccaaatttaaaa 197  Q
    |||||||| ||| | |||||||||||||||    
T  28142468 gaaattagggggattccgccaaatttaaaa 28142497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 318 - 459
Target Start/End: Complemental strand, 28095586 - 28095445
Alignment:
Q  318 ttatttatggctaacaggaactgcatgagggtggagaaaccaagttttgtttgcctggatttgcaaggattccagagtggtttgatcgccaaaacatggg 417  Q
    ||||||||| |||| ||||||||||||| | |||||| |||| |||| | ||||| |||  |  ||||||||||  ||||||||| | ||||| ||   |    
T  28095586 ttatttatgactaataggaactgcatgaagttggagacaccatgtttcgattgccaggaactttaaggattccaaggtggtttgagcaccaaagcacacg 28095487  T
Q  418 acatacaatttctttttggttccgtaacaacctcccttccat 459  Q
    |||  |||||||||| ||||| | |||||| |||||||||||    
T  28095486 acagccaatttctttctggtttcataacaagctcccttccat 28095445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 329 - 467
Target Start/End: Complemental strand, 2170758 - 2170620
Alignment:
Q  329 taacaggaactgcatgagggtggagaaaccaagttttgtttgcctggatttgcaaggattccagagtggtttgatcgccaaaacatgggacatacaattt 428  Q
    ||||||||  ||||||| | |||||  ||| ||||| ||||| | |||  ||| ||||||||||||||||||||||  |||| || |||||   ||||||    
T  2170758 taacaggatgtgcatgaagatggaggcaccgagtttagtttggcaggaagtgctaggattccagagtggtttgatcaacaaagcaagggaccatcaattt 2170659  T
Q  429 ctttttggttccgtaacaacctcccttccatggctctct 467  Q
    |||| ||||| ||| |||   |||||||||| |||||||    
T  2170658 ctttctggtttcgtgacaggttcccttccatagctctct 2170620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 423 - 457
Target Start/End: Original strand, 27217601 - 27217635
Alignment:
Q  423 caatttctttttggttccgtaacaacctcccttcc 457  Q
    |||||||||||| ||||||||||||||||||||||    
T  27217601 caatttctttttcgttccgtaacaacctcccttcc 27217635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 595 - 629
Target Start/End: Original strand, 28328864 - 28328898
Alignment:
Q  595 tcatcatacatatttgtatgatatggagctggaat 629  Q
    ||||||||||||||||||||||||| |||||||||    
T  28328864 tcatcatacatatttgtatgatatgaagctggaat 28328898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 595 - 629
Target Start/End: Original strand, 28506500 - 28506534
Alignment:
Q  595 tcatcatacatatttgtatgatatggagctggaat 629  Q
    ||||||||||||||||||||||||| |||||||||    
T  28506500 tcatcatacatatttgtatgatatgaagctggaat 28506534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 482
Target Start/End: Original strand, 46199 - 46674
Alignment:
Q  17 gtcagctgaatttcttccaatagttgtcatgtggtccgccaatgtgaaattgttagccctaacaggaagtaattttacaattcttccagaatgcatcaaa 116  Q
    ||||| |||||||||||||||||||||||||||||| || |||||  |||| |||  |||| ||| ||  ||||| ||||||||||||||||||||||||    
T  46199 gtcagatgaatttcttccaatagttgtcatgtggtctgcgaatgtagaatttttaaacctatcagaaaacaatttcacaattcttccagaatgcatcaaa 46298  T
Q  117 gattgtcactttttaacagatcttgaattgaataattgcaagtgccttagagaaattagaggggtgccgccaaatttaaaatggttgtctgcaaaaggct 216  Q
    ||||||| |||||||     ||||   ||| || ||||||||||||||||||||||||||||| | || ||||||||||||   |||||||||| | |||    
T  46299 gattgtcgctttttatggtctcttaggttggatgattgcaagtgccttagagaaattagagggattccaccaaatttaaaacacttgtctgcaatacgct 46398  T
Q  217 gcgaatccttgacttcctcggccagaaacatgctattgaatcaggnnnnnnnnnnc----------ccttgtatttgacttaatattttataagattgtt 306  Q
    || |||| ||||||||||||  || ||||||||||||||||||||                     ||||||||||||||||||||| ||||| ||||||    
T  46399 gcaaatcattgacttcctcgtgcaaaaacatgctattgaatcaggttttgttttgtttattgttttccttgtatttgacttaatattatataatattgtt 46498  T
Q  307 tactctatgatttatttatggctaacaggaactgcatgagggtggagaaaccaagttttgtttgcctggatttgcaaggattccagagtggtttgatcgc 406  Q
    ||||| |||| |||||||||||||||||||||||||||||| ||||| |||||| ||||||||  | |||||||||||||||||||| |||||||||| |    
T  46499 tactcaatgaattatttatggctaacaggaactgcatgaggctggaggaaccaaattttgtttttcaggatttgcaaggattccagattggtttgatcac 46598  T
Q  407 caaaacatgggacatacaatttctttttggttccgtaacaacctcccttccatggctctctgtttttctactaaat 482  Q
    |||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  46599 caaagcatgggacatacaatttctttttggtttcgtaacaagctcccttccatggctctctgtttttctactaaat 46674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 150; E-Value: 8e-79
Query Start/End: Original strand, 273 - 482
Target Start/End: Original strand, 39487 - 39696
Alignment:
Q  273 ccttgtatttgacttaatattttataagattgtttactctatgatttatttatggctaacaggaactgcatgagggtggagaaaccaagttttgtttgcc 372  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||  ||||||||  |    
T  39487 ccttgtatttgtcttaatattttataagattgtttactctatgaattatttatggctaacaggaactgcatgaggctggaggaaccatattttgtttttc 39586  T
Q  373 tggatttgcaaggattccagagtggtttgatcgccaaaacatgggacatacaatttctttttggttccgtaacaacctcccttccatggctctctgtttt 472  Q
     |||||||  ||||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  39587 aggatttgtgaggattccagagtggtttgatcatcaaaacatgggacatacaatttctttttggtttcgtaacaagctcccttccatggctctctgtttt 39686  T
Q  473 tctactaaat 482  Q
    ||||||||||    
T  39687 tctactaaat 39696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 17 - 261
Target Start/End: Original strand, 39218 - 39462
Alignment:
Q  17 gtcagctgaatttcttccaatagttgtcatgtggtccgccaatgtgaaattgttagccctaacaggaagtaattttacaattcttccagaatgcatcaaa 116  Q
    ||||| |||||||||||||||| ||||||||||||| || ||||||  |  ||||| |||| |||||| |||||| ||||||||||||||||||||||||    
T  39218 gtcagatgaatttcttccaataattgtcatgtggtctgctaatgtgtcaaagttagacctatcaggaaataatttcacaattcttccagaatgcatcaaa 39317  T
Q  117 gattgtcactttttaacagatcttgaattgaataattgcaagtgccttagagaaattagaggggtgccgccaaatttaaaatggttgtctgcaaaaggct 216  Q
    ||||||| ||||||||| ||||||  |||| || ||||||| ||||||||||||||||||||| | || ||||||||||||   ||||||||||||  ||    
T  39318 gattgtcgctttttaacggatcttatattggatgattgcaaatgccttagagaaattagagggattccaccaaatttaaaacacttgtctgcaaaatact 39417  T
Q  217 gcgaatccttgacttcctcggccagaaacatgctattgaatcagg 261  Q
    || |||| |||| ||||||||||||||||||||||||||||||||    
T  39418 gcaaatcattgatttcctcggccagaaacatgctattgaatcagg 39462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 660 - 800
Target Start/End: Original strand, 46858 - 46998
Alignment:
Q  660 tagaaaatgactggaatcatgcagagattatatgtgaacatcagaaggtggaaccaataacagaaattggaatccattttttcaaacagaaaaataacat 759  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| || ||||||||||    
T  46858 tagaaaatgagtggaatcatgcagagattatatgtgaacatcaggaggtggaaccaataacagaaattggaatccatttttacaaagagcaaaataacat 46957  T
Q  760 ggatgatattcaattcaccaatccttatgaaaagataaaat 800  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  46958 ggatgatattcaattcaccaatccttatgaaaagataaaat 46998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #5
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 657 - 800
Target Start/End: Original strand, 39865 - 40008
Alignment:
Q  657 ttttagaaaatgactggaatcatgcagagattatatgtgaacatcagaaggtggaaccaataacagaaattggaatccattttttcaaacagaaaaataa 756  Q
    ||||| ||||||| ||||||||||||||| |||||| |||||||   || ||||||||| |||||||||||||||||||||||||||||||  |||||||    
T  39865 ttttaaaaaatgaatggaatcatgcagaggttatatttgaacattcaaatgtggaaccactaacagaaattggaatccattttttcaaacacgaaaataa 39964  T
Q  757 catggatgatattcaattcaccaatccttatgaaaagataaaat 800  Q
    ||||||||| |||||||||||||||||||| |||| | ||||||    
T  39965 catggatgacattcaattcaccaatccttaagaaaggttaaaat 40008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 179; Significance: 4e-96; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 25 - 482
Target Start/End: Complemental strand, 55723 - 55256
Alignment:
Q  25 aatttcttccaatagttgtcatgtggtccgccaatgtgaaattgttagccctaacaggaagtaattttacaattcttccagaatgcatcaaagattgtca 124  Q
    |||||||||||||| ||||||||||||| || |||||||||   |||| |||| |||||| |||||| ||||||||||| |||||||| ||||||||||     
T  55723 aatttcttccaatacttgtcatgtggtctgctaatgtgaaaactttagacctatcaggaaataatttcacaattcttccggaatgcatgaaagattgtcg 55624  T
Q  125 ctttttaacagatcttgaattgaataattgcaagtgccttagagaaattagaggggtgccgccaaatttaaaatggttgtctgcaaaaggctgcgaatcc 224  Q
    ||||||      |||| ||||| || |||||||||||||| |||||||||||||| | || |||||| |||||   |||||||||| | ||||| ||||     
T  55623 ctttttgtggtttcttaaattggatgattgcaagtgccttcgagaaattagagggattccaccaaatgtaaaacacttgtctgcaatacgctgcaaatca 55524  T
Q  225 ttgacttcctcggccagaaacatgctattgaatcaggnnnnnnnnnnc----------ccttgtatttgacttaatattttataagattgtttactctat 314  Q
    ||||||||||||  || | ||||||||||||||||||                     ||||||||||||||||||||| ||||| | |||||||||| |    
T  55523 ttgacttcctcgtgcaaacacatgctattgaatcaggttttgttttgttttttgttttccttgtatttgacttaatattatataatactgtttactcttt 55424  T
Q  315 gatttatttatggctaacaggaactgcatgagggtggagaaaccaagttttgtttgcctggatttgcaaggattccagagtggtttgatcgccaaaacat 414  Q
    ||||||||||||||||||||||  ||||||||| |||| |||||| |||||||||||| ||||||||||||||||||||||||||||| | |||||||||    
T  55423 gatttatttatggctaacaggatatgcatgaggctggacaaaccatgttttgtttgccgggatttgcaaggattccagagtggtttgagcaccaaaacat 55324  T
Q  415 gggacatacaatttctttttggttccgtaacaacctcccttccatggctctctgtttttctactaaat 482  Q
    ||||||||| |||||||||||||| |||||||| |||||||||| |||||||| ||||||||||||||    
T  55323 gggacatacgatttctttttggtttcgtaacaagctcccttccacggctctctttttttctactaaat 55256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 657 - 800
Target Start/End: Complemental strand, 55078 - 54935
Alignment:
Q  657 ttttagaaaatgactggaatcatgcagagattatatgtgaacatcagaaggtggaaccaataacagaaattggaatccattttttcaaacagaaaaataa 756  Q
    ||||||||||||| ||||  ||||||||| ||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  55078 ttttagaaaatgaatggatccatgcagaggttacatgtgaacatccgaaggtggaaccactaacagaaattggaatccattttttcaaacagaaaaataa 54979  T
Q  757 catggatgatattcaattcaccaatccttatgaaaagataaaat 800  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  54978 catggatgatattcaattcaccaatccttatgaaaagataaaat 54935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 329 - 467
Target Start/End: Original strand, 12503 - 12641
Alignment:
Q  329 taacaggaactgcatgagggtggagaaaccaagttttgtttgcctggatttgcaaggattccagagtggtttgatcgccaaaacatgggacatacaattt 428  Q
    ||||||||  ||||||| | |||||  ||| ||||| ||||| | |||  ||| ||||||||||||||||||||||  |||| || |||||   ||||||    
T  12503 taacaggatgtgcatgaagatggaggcaccgagtttagtttggcaggaagtgctaggattccagagtggtttgatcaacaaagcaagggaccatcaattt 12602  T
Q  429 ctttttggttccgtaacaacctcccttccatggctctct 467  Q
    |||| ||||| ||| |||   |||||||||| |||||||    
T  12603 ctttctggtttcgtgacaggttcccttccatagctctct 12641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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