View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18857_low_11 (Length: 354)
Name: NF18857_low_11
Description: NF18857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18857_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 7534706 - 7534933
Alignment:
| Q |
17 |
agatgcccaatactagcaatcatctctactagactgacataatgggccattgttggtacaatgccatagtctttgctcatggattcaaagtggagcattc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7534706 |
agatgcccaatactagcaatcatctctactagactgacataatgggccattgttggtacaatgccatagtctttgctcatggattcaaagtggagcattc |
7534805 |
T |
|
| Q |
117 |
cctcactaatatctcccaacatactacatgcaccaaaaactccaataaacatttggccatcaggttttagtcccatgtttttaaattgagtaaatatatc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7534806 |
cctcactaatatctcccaacatactacatgcaccaaaaactccaataaacatttggccatcaggttttagtcccatgtttttaaattgagtaaatatatc |
7534905 |
T |
|
| Q |
217 |
aattgaatcttctggaaacccattcttg |
244 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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|
| T |
7534906 |
aattgaatcttctggaaacccattcttg |
7534933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 7449168 - 7449395
Alignment:
| Q |
17 |
agatgcccaatactagcaatcatctctactagactgacataatgggccattgttggtacaatgccatagtctttgctcatggattcaaagtggagcattc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7449168 |
agatgcccaatactagcaatcatctctactagactgacataatgggccattgttggtacaatgccatagtctttgctcatggattcaaagtgcagcattc |
7449267 |
T |
|
| Q |
117 |
cctcactaatatctcccaacatactacatgcaccaaaaactccaataaacatttggccatcaggttttagtcccatgtttttaaattgagtaaatatatc |
216 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7449268 |
cctcactaatatctcccaacatactacatgcaccaaaaactccaataaacatttggccatcaggttttagtcccatgtttttaaattgagtaaatatatc |
7449367 |
T |
|
| Q |
217 |
aattgaatcttctggaaacccattcttg |
244 |
Q |
| |
|
|||||||||||||| ||| ||||||||| |
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|
| T |
7449368 |
aattgaatcttctgcaaaaccattcttg |
7449395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 243 - 346
Target Start/End: Original strand, 7449417 - 7449520
Alignment:
| Q |
243 |
tgccaagtagtcaaatcgtactcaggcatgctcttgaacacgtcgattgcatcatctagagaaccacattcaaaatacatctccaatactctattgtctg |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7449417 |
tgccaagtagtcaaatcgtactcaggcatgctcttgaacacgtcgattgcatcatctagagaaccacattcaaaatacatctccaatactctattgtctg |
7449516 |
T |
|
| Q |
343 |
tgct |
346 |
Q |
| |
|
|||| |
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|
| T |
7449517 |
tgct |
7449520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 243 - 346
Target Start/End: Original strand, 7534955 - 7535058
Alignment:
| Q |
243 |
tgccaagtagtcaaatcgtactcaggcatgctcttgaacacgtcgattgcatcatctagagaaccacattcaaaatacatctccaatactctattgtctg |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7534955 |
tgccaagtagtcaaatcgtactcaggcatgctcttgaacacgtcgattgcatcatctagagaaccacattcaaaatacatctccaatactctattgtctg |
7535054 |
T |
|
| Q |
343 |
tgct |
346 |
Q |
| |
|
|||| |
|
|
| T |
7535055 |
tgct |
7535058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 143; Significance: 5e-75; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 17 - 243
Target Start/End: Original strand, 18664157 - 18664383
Alignment:
| Q |
17 |
agatgcccaatactagcaatcatctctactagactgacataatgggccattgttggtacaatgccatagtctttgctcatggattcaaagtggagcattc |
116 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||| |||||||| |||| |||||||||||| ||||||| | ||||||||||||||||| ||||||| |
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| T |
18664157 |
agatgcccaatactaccaatcatgtctactagacttacataatgttccatagttggtacaatgtcatagtccctactcatggattcaaagtgcagcattc |
18664256 |
T |
|
| Q |
117 |
cctcactaatatctcccaacatactacatgcaccaaaaactccaataaacatttggccatcaggttttagtcccatgtttttaaattgagtaaatatatc |
216 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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|
| T |
18664257 |
cctcaacaatatctcccaacatactacatgcaccaaaaaccccaataaacatttggccatcaggttttagtcctgaccttttaaattgagtaaataaatc |
18664356 |
T |
|
| Q |
217 |
aattgaatcttctggaaacccattctt |
243 |
Q |
| |
|
|||||||||||||| |||||||||||| |
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|
| T |
18664357 |
aattgaatcttctgcaaacccattctt |
18664383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 248 - 347
Target Start/End: Original strand, 18664411 - 18664510
Alignment:
| Q |
248 |
agtagtcaaatcgtactcaggcatgctcttgaacacgtcgattgcatcatctagagaaccacattcaaaatacatctccaatactctattgtctgtgctg |
347 |
Q |
| |
|
||||||||||||| ||||| |||| ||||||| |||| || ||||||||||| ||||||||||| ||||||||||||||||| || |||| ||||||| |
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| T |
18664411 |
agtagtcaaatcgcgctcagtcatgttcttgaatacgttgactgcatcatctacagaaccacattgaaaatacatctccaatattccattgcatgtgctg |
18664510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 335
Target Start/End: Original strand, 18664740 - 18664798
Alignment:
| Q |
277 |
tgaacacgtcgattgcatcatctagagaaccacattcaaaatacatctccaatactcta |
335 |
Q |
| |
|
||||||||| || ||||||||||| ||||||||||| |||||||||||| |||| |||| |
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|
| T |
18664740 |
tgaacacgttgactgcatcatctacagaaccacattgaaaatacatctctaatattcta |
18664798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 131; Significance: 7e-68; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 17 - 243
Target Start/End: Complemental strand, 15079671 - 15079445
Alignment:
| Q |
17 |
agatgcccaatactagcaatcatctctactagactgacataatgggccattgttggtacaatgccatagtctttgctcatggattcaaagtggagcattc |
116 |
Q |
| |
|
|||| |||||||||| ||||||| ||||||| ||| |||||||| |||| ||||||||||| ||||||| | ||||||||||||||||| ||||||| |
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|
| T |
15079671 |
agattcccaatactaccaatcatgtctactatacttacataatgttccatagttggtacaatttcatagtccctactcatggattcaaagtgcagcattc |
15079572 |
T |
|
| Q |
117 |
cctcactaatatctcccaacatactacatgcaccaaaaactccaataaacatttggccatcaggttttagtcccatgtttttaaattgagtaaatatatc |
216 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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|
| T |
15079571 |
cctcaacaatatctcccaacatactacatgcaccaaaaaccccaataaacatttggccatcaggttttagtcctgaccttttaaattgagtaaataaatc |
15079472 |
T |
|
| Q |
217 |
aattgaatcttctggaaacccattctt |
243 |
Q |
| |
|
|||||||||||||| |||||||||||| |
|
|
| T |
15079471 |
aattgaatcttctgcaaacccattctt |
15079445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 248 - 347
Target Start/End: Complemental strand, 15079417 - 15079318
Alignment:
| Q |
248 |
agtagtcaaatcgtactcaggcatgctcttgaacacgtcgattgcatcatctagagaaccacattcaaaatacatctccaatactctattgtctgtgctg |
347 |
Q |
| |
|
||||||||||||| ||| |||| ||||||| |||| || ||||||||||| ||||||||||| ||||||||||||||||| || |||| ||||||| |
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|
| T |
15079417 |
agtagtcaaatcgcgttcattcatgttcttgaatacgttgactgcatcatctacagaaccacattgaaaatacatctccaatattccattgcatgtgctg |
15079318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 335
Target Start/End: Complemental strand, 15079088 - 15079030
Alignment:
| Q |
277 |
tgaacacgtcgattgcatcatctagagaaccacattcaaaatacatctccaatactcta |
335 |
Q |
| |
|
||||||||| || ||||||||||| ||||||||||| |||||||||||| |||| |||| |
|
|
| T |
15079088 |
tgaacacgttgactgcatcatctacagaaccacattgaaaatacatctctaatattcta |
15079030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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