View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18857_low_12 (Length: 326)
Name: NF18857_low_12
Description: NF18857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18857_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 7535035 - 7535348
Alignment:
| Q |
1 |
ctccaatactctattgtctgtgctaaccgtaagaggatgcaaatgttgcaaagcatgtctgtgtacaactcttgcctcttcaagagacttagtcttccca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7535035 |
ctccaatactctattgtctgtgctaaccgtaagaggatgcaaatgttgcaaagcatgtctgtgtacaactcttgcctcttcaagagacttagtcttccca |
7535134 |
T |
|
| Q |
101 |
caaacgtgcattaattgcaaacaacgctgcaaatccatatgaatataaagcttttccaacacttgcaaaatgtcaaccgattcattcactttaccatccc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7535135 |
caaacgtgcattaattgcaaacaacgctgcaaatccatatgaatataaagcttttccaacacttgcaaaatgtcaaccgcttcattcactttaccatccc |
7535234 |
T |
|
| Q |
201 |
tgcaaaaactatctagtacttctacgagtgtgcctttgtacgaactatttgaactagcatgtttatatcgataagatccactagcccttcggttatacaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7535235 |
tgcaaaaactatctagtacttctacgagtgtgcctttgtactaactatttgaactagcatgtttatatcgataagatccactagcccttcggttatacaa |
7535334 |
T |
|
| Q |
301 |
cccagcacgatttt |
314 |
Q |
| |
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|||||||||||||| |
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| T |
7535335 |
cccagcacgatttt |
7535348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 7449497 - 7449796
Alignment:
| Q |
1 |
ctccaatactctattgtctgtgctaaccgtaagaggatgcaaatgttgcaaagcatgtctgtgtacaactcttgcctcttcaagagacttagtcttccca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
7449497 |
ctccaatactctattgtctgtgctaaccgtaagaggatgcaaatgttgcaaagcatgtctgtgtacaactcttgcctcctcaagagacttagccttccca |
7449596 |
T |
|
| Q |
101 |
caaacgtgcattaattgcaaacaacgctgcaaatccatatgaatataaagcttttccaacacttgcaaaatgtcaaccgattcattcactttaccatccc |
200 |
Q |
| |
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|||| | |||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||| | ||||| | ||| |||||||||||||||| |
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| T |
7449597 |
caaatgcgcattaattgcaaacaacgctgcaaatccacatgaatatgaagcttttccaacttttgcaaattttcaactgcttccttcactttaccatccc |
7449696 |
T |
|
| Q |
201 |
tgcaaaaactatctagtacttctacgagtgtgcctttgtacgaactatttgaactagcatgtttatatcgataagatccactagcccttcggttatacaa |
300 |
Q |
| |
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|||||||||||||||| ||| | |||||||| || ||| ||||| |||||||||| |||||| |||||||||||||| ||| | |||||||||| |
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| T |
7449697 |
tgcaaaaactatctag---ttcctcaagtgtgccgttatacaaactacctgaactagcaagtttatcccgataagatccactttcccataggttatacaa |
7449793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 40 - 213
Target Start/End: Original strand, 18664525 - 18664698
Alignment:
| Q |
40 |
caaatgttgcaaagcatgtctgtgtacaactcttgcctcttcaagagacttagtcttcccacaaacgtgcattaattgcaaacaacgctgcaaatccata |
139 |
Q |
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||||||||| ||| ||| ||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||| |||||||||| | |||||| | | |
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| T |
18664525 |
caaatgttgtaaaacatatctgtgtacaacttttgcctcttcaagagacttggtcttcccacattgttgcattaatcgcaaacaacgatccaaatctaca |
18664624 |
T |
|
| Q |
140 |
tgaatataaagcttttccaacacttgcaaaatgtcaaccgattcattcactttaccatccctgcaaaaactatc |
213 |
Q |
| |
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|||||| || |||||| ||||||||||||| |||| | ||| ||||||| ||| ||| ||||| ||||||| |
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| T |
18664625 |
agaatatgaaacttttctaacacttgcaaaacatcaattgcttccttcacttcaccctccatgcaagaactatc |
18664698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 170
Target Start/End: Original strand, 18664825 - 18664955
Alignment:
| Q |
40 |
caaatgttgcaaagcatgtctgtgtacaactcttgcctcttcaagagacttagtcttcccacaaacgtgcattaattgcaaacaacgctgcaaatccata |
139 |
Q |
| |
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||||||||| ||| ||| | ||||||||||| |||||||||||||| ||| || ||| ||||| | ||||||||| |||||||| | | |||||||| | |
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| T |
18664825 |
caaatgttgtaaaacatatatgtgtacaacttttgcctcttcaagaaactcagcctttccacacagttgcattaatcgcaaacaaagatacaaatccaca |
18664924 |
T |
|
| Q |
140 |
tgaatataaagcttttccaacacttgcaaaa |
170 |
Q |
| |
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| | ||| ||||||||| ||| ||||||||| |
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| T |
18664925 |
taagtatgaagcttttctaactcttgcaaaa |
18664955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 40 - 213
Target Start/End: Complemental strand, 15079303 - 15079130
Alignment:
| Q |
40 |
caaatgttgcaaagcatgtctgtgtacaactcttgcctcttcaagagacttagtcttcccacaaacgtgcattaattgcaaacaacgctgcaaatccata |
139 |
Q |
| |
|
||||||||| ||| ||| ||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||| ||||||||| | |||||| | | |
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| T |
15079303 |
caaatgttgtaaaacatatctgtgtacaacttttgcctcttcaagagacttggtcttcccacattgttgcattaatctcaaacaacgatccaaatctaca |
15079204 |
T |
|
| Q |
140 |
tgaatataaagcttttccaacacttgcaaaatgtcaaccgattcattcactttaccatccctgcaaaaactatc |
213 |
Q |
| |
|
||||||| || |||||| ||||||||||||| |||| | ||| ||||||| ||| ||| ||||| ||||||| |
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| T |
15079203 |
tgaatatgaaacttttctaacacttgcaaaacatcaattgcttccttcacttcaccctccatgcaagaactatc |
15079130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 40 - 170
Target Start/End: Complemental strand, 15079003 - 15078873
Alignment:
| Q |
40 |
caaatgttgcaaagcatgtctgtgtacaactcttgcctcttcaagagacttagtcttcccacaaacgtgcattaattgcaaacaacgctgcaaatccata |
139 |
Q |
| |
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||||||||| ||| ||| ||||||||||||| |||||||||||||| ||| || ||| ||||| | ||||||||| |||||||| | | |||||||| | |
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| T |
15079003 |
caaatgttgtaaaacatatctgtgtacaacttttgcctcttcaagaaactcagcctttccacacagttgcattaatcgcaaacaaagatacaaatccaca |
15078904 |
T |
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| Q |
140 |
tgaatataaagcttttccaacacttgcaaaa |
170 |
Q |
| |
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| | ||| ||||||||| ||| ||||||||| |
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| T |
15078903 |
taagtatgaagcttttctaactcttgcaaaa |
15078873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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