View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18857_low_13 (Length: 319)
Name: NF18857_low_13
Description: NF18857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18857_low_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 26418012 - 26417711
Alignment:
| Q |
1 |
gcatccaataaatgtagctgccttggtagttcatacatcctaaaaagagtttatgaattttatgaataaaactattctaaggtgaacaaaatcaatagtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26418012 |
gcatccaataaatgtagctgccttggtagttcatacatcctaaaaagagtttatgaattttatgaataaaactattctaaggtgaacaaaatcaatagtg |
26417913 |
T |
|
| Q |
101 |
cactagtatcacattgaaatttttgaattcatgaattaattaatatgatcatgataggctttctacttgctactactctgacgatcctacatttagataa |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26417912 |
cactagtatcatattgaaatttttgaattcatgaattaattaatatgatcatgataggctttctacttgctactactctgacgatcctacatttagataa |
26417813 |
T |
|
| Q |
201 |
gctttttccacaattgtgtaacatagaagcttataaattatggctatttaatgtggaaatttgtagtaaggtttatctatttattgcttcaccctctcga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26417812 |
gctttttccacaattgtgtaacatagaagcttataaattatggctatttaatgtggaaatttgtagtaaggtttatctatttattgcttcaccctctcga |
26417713 |
T |
|
| Q |
301 |
at |
302 |
Q |
| |
|
|| |
|
|
| T |
26417712 |
at |
26417711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University