View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18857_low_14 (Length: 313)
Name: NF18857_low_14
Description: NF18857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18857_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 16224701 - 16225003
Alignment:
| Q |
1 |
gttggaagagttaagtggagagaatgagggagaaggtgccgaggccattgagcaagaaggatcaagggtttaaactgcagtcacagtcataaataccggt |
100 |
Q |
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| T |
16224701 |
gttggaagagttaagtggagagaatgagggagaaggtgccgaggccactgagcaagaaggatcaagggtttaaactgcagtcacagtcataaataccggt |
16224800 |
T |
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| Q |
101 |
gcataacatgaattaattttatatttgcaacatgtttttaaaatcttataccttctatttttccactccataggttatcaattatgt----ttattttgt |
196 |
Q |
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| T |
16224801 |
gcataacatgaattaattttatatttgcaacatgtttttaaaatcttaaaccttctatttttcccctccataggttatcaattaagtattattattttgt |
16224900 |
T |
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| Q |
197 |
gtgatactactactttggaatataagaagattgaaaatgaatttctgtgagccc----tataatccctaaaccctattcttattgcctattggtaaccac |
292 |
Q |
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| T |
16224901 |
gtgattctactactttggaatataagaagattgaaaaggaatttctgtgagccctatatataaaccctaaaccctatgtttattgcctattggtacccac |
16225000 |
T |
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| Q |
293 |
tgt |
295 |
Q |
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||| |
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| T |
16225001 |
tgt |
16225003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 16185311 - 16185371
Alignment:
| Q |
1 |
gttggaagagttaagtggagagaatgagggagaaggtgccgaggccattgagcaagaagga |
61 |
Q |
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| T |
16185311 |
gttggaagagttgagtggagagaacgagggagaaggtgccgaggccactgaacaagaagga |
16185371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 96
Target Start/End: Complemental strand, 16174050 - 16173956
Alignment:
| Q |
2 |
ttggaagagttaagtggagagaatgagggagaaggtgccgaggccattgagcaagaaggatcaagggtttaaactgcagtcacagtcataaatac |
96 |
Q |
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| T |
16174050 |
ttggaagagttgagtggagagaatgaaggagaaagtgttgaggacactcggcaagaaggatcgggggtttaaactgtgctcacagtcatgaatac |
16173956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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