View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18857_low_15 (Length: 312)
Name: NF18857_low_15
Description: NF18857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18857_low_15 |
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| [»] scaffold0340 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 304
Target Start/End: Original strand, 21837251 - 21837537
Alignment:
| Q |
18 |
atatgtgatacctgcaagccacttttaaggttgacgattgtatatcaacatttgtgaaaggatattgaaacttgaaaccagatgggtaatttcgtggtct |
117 |
Q |
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| T |
21837251 |
atatgtgatacctgcaagccacttttaaggttgacgattgtatatcaacatttgtgaaaggatattgaaacttgaaaccagatgggtaatttcgtggtct |
21837350 |
T |
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| Q |
118 |
tctaaaggatttttgactcacaattcataagaaattatggtggattctagagtgagggtccaactaagttcttcacagatataccactaattttaacctt |
217 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||| | | ||||||||||||||||||| |
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| T |
21837351 |
tctaaacgatttttgactcacaattcataagaaattatggtggattctagggtgagggtccaactaagtccctcaccggtttaccactaattttaacctt |
21837450 |
T |
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| Q |
218 |
tagattaaatagacccacactatttaattattcatcaccgcaccggatctttgcacgttgcatctgcactctaccaaatttcttctc |
304 |
Q |
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| T |
21837451 |
tagattaaatagacccacacgatttaattattcatcaccgcactggatctttgcacgttgcatctgcactctaccaaatttcttctc |
21837537 |
T |
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Target: chr7 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 158 - 304
Target Start/End: Original strand, 22297016 - 22297162
Alignment:
| Q |
158 |
tggattctagagtgagggtccaactaagttcttcacagatataccactaattttaacctttagattaaatagacccacactatttaattattcatcaccg |
257 |
Q |
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| T |
22297016 |
tggattctagggtgagagtccaactaagtccctcaccgatgtaccactaattttaacctttagattaaatagacccacacgatttaattattcatcaccg |
22297115 |
T |
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| Q |
258 |
caccggatctttgcacgttgcatctgcactctaccaaatttcttctc |
304 |
Q |
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| T |
22297116 |
cactggatctttgcacgttgcatctgcactctaccagatttcttctc |
22297162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 231
Target Start/End: Complemental strand, 34595981 - 34595907
Alignment:
| Q |
157 |
gtggattctagagtgagggtccaactaagttcttcacagatataccactaattttaacctttagattaaatagac |
231 |
Q |
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| T |
34595981 |
gtggattctagagtgagggttcaactaaatccctcaccggtgtaccactaattttgacctttaaattaaaaagac |
34595907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 29594906 - 29594955
Alignment:
| Q |
156 |
ggtggattctagagtgagggtccaactaagttcttcacagatataccact |
205 |
Q |
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| T |
29594906 |
ggtggattctagggtgagggttcaattaagttcttcaccgatgtaccact |
29594955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 186
Target Start/End: Original strand, 23257317 - 23257349
Alignment:
| Q |
154 |
atggtggattctagagtgagggtccaactaagt |
186 |
Q |
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| T |
23257317 |
atggtggattctagagtgagggtccaattaagt |
23257349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 211
Target Start/End: Complemental strand, 27345968 - 27345912
Alignment:
| Q |
155 |
tggtggattctagagtgagggtccaactaagttcttcacagatataccactaatttt |
211 |
Q |
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| T |
27345968 |
tggtggattctagggtgagggttcaattaagtccctcaccgatataccacttatttt |
27345912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0340 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0340
Description:
Target: scaffold0340; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 186
Target Start/End: Original strand, 9343 - 9379
Alignment:
| Q |
150 |
aattatggtggattctagagtgagggtccaactaagt |
186 |
Q |
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| T |
9343 |
aattatggtggattctagagtgaaggtccaaccaagt |
9379 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 13084927 - 13084847
Alignment:
| Q |
156 |
ggtggattctagagtgagggtccaactaagttcttcacagatataccactaattttaacctttagattaaatagacccaca |
236 |
Q |
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| T |
13084927 |
ggtgaattctagggtgagggttcaactaagtctctcaccggtgtaccactaactttgacctttagattaaaaagactcaca |
13084847 |
T |
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