View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18857_low_17 (Length: 298)
Name: NF18857_low_17
Description: NF18857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18857_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 16 - 281
Target Start/End: Complemental strand, 30787153 - 30786888
Alignment:
| Q |
16 |
atcaactgagcatgattaaagatatatatgaaataactcttagtcaaaagttaaaaatgacaggaagaaggacagnnnnnnntagataattaaatcttaa |
115 |
Q |
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| T |
30787153 |
atcaactgagcatgattaaagatatatatgaaataactcttagtcaaaagttaaaaatgacaggaagaaggacagaaaaaaatagataattaaatcttaa |
30787054 |
T |
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| Q |
116 |
aagcattacctatgacagaaccaaactttaggtatgtggcgatcattgatttcttatcttagtggtgtcaagacatggagaaagcaacctttgatggcac |
215 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30787053 |
aagcattacctatgacagaaacaaactttaggtatgtggcgatcattgatttcttatcttagtggtgtcaagacatggagaaagcaacctttgatggcac |
30786954 |
T |
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| Q |
216 |
ttggtctttttaactagtagcataatttatcttgatgcaaagaatatgcttgtccactgtgggaac |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30786953 |
ttggtctttttaactagtagcataatttatcttgatgcaaagaatatgcttgtccactgtgggaac |
30786888 |
T |
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