View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18857_low_2 (Length: 896)

Name: NF18857_low_2
Description: NF18857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18857_low_2
NF18857_low_2
[»] chr7 (4 HSPs)
chr7 (302-613)||(27658121-27658432)
chr7 (10-234)||(27658500-27658724)
chr7 (773-880)||(33602427-33602528)
chr7 (691-750)||(27656844-27656903)
[»] chr5 (9 HSPs)
chr5 (298-613)||(37605628-37605941)
chr5 (10-234)||(37605341-37605564)
chr5 (49-234)||(33360553-33360739)
chr5 (46-234)||(5742798-5742984)
chr5 (337-601)||(33360837-33361104)
chr5 (474-601)||(5742432-5742556)
chr5 (691-755)||(37606029-37606093)
chr5 (337-444)||(5742592-5742700)
chr5 (711-753)||(30891764-30891806)
[»] chr6 (4 HSPs)
chr6 (49-234)||(18084829-18085015)
chr6 (474-601)||(18085257-18085380)
chr6 (691-755)||(31559482-31559546)
chr6 (337-444)||(18085113-18085221)
[»] scaffold0856 (2 HSPs)
scaffold0856 (49-234)||(800-986)
scaffold0856 (337-601)||(1084-1351)
[»] chr4 (1 HSPs)
chr4 (716-753)||(7453567-7453604)


Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 302 - 613
Target Start/End: Complemental strand, 27658432 - 27658121
Alignment:
302 ggtttaggattttttatcttcttcttatctactaagaatcaaaccaacgtttagcacaacaaggtataacaacaattacaagccactgaaattctaaaaa 401  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
27658432 ggtttaggatttttttccttcttcttatctactaagaatcaaaccaacgtttagcacaacaaggtataacaacaattacaagccactgaaattctaaaaa 27658333  T
402 caagaacagagaaaggaaaaaacctgggtatgaaaacaaggagatgaatatggcgtcgcagccgagacaggcggagtgaccgaaaatagcatgagagggt 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
27658332 caagaacagagaaaggaaaaaacctgggtatgaaaacaaggagatgaatatggcgtcgcagccgagacaggcggagtgaccgaaaatagcatgagagggt 27658233  T
502 ggtactgtacaaagatgaagaaggagtgacgagaagctatgagtgaatgaaagataatttgttcttgcttataggaaatgagtgaatcagagagagggaa 601  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
27658232 ggcactgtacaaagatgaagaaggagtgacgagaagctatgagtgaatgaaagataatttgttcttgcttataggaaatgagtgaatcagagagagagaa 27658133  T
602 ggaaaacgaaac 613  Q
    ||||||||||||    
27658132 ggaaaacgaaac 27658121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 10 - 234
Target Start/End: Complemental strand, 27658724 - 27658500
Alignment:
10 aaaatacaagagaaaaattgtaacacaaaattgattatggggtattagatttaagtattagctattttgaagtctataatcatgcaattaagttgagaaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
27658724 aaaatacaagagaaaaattgtaacacaaaattgattatggggtattagatttaagtattagctgttttgaagtctataatcatgcaattaagttgagaaa 27658625  T
110 attaatattgaacatattcagtatataaatcttaatcaacttcatcatttcgtcaattcaaaaatttagggtttttaattagaaatttggggaaaacgaa 209  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
27658624 attaatattgaacatattcagtatataaatcttaatcaatttcatcatttcgtcaattcaaaaatttagggtttttaatttgaaatttggggaaaacgaa 27658525  T
210 aataatgaaggaatcatctcacccc 234  Q
    |||||||||||||||||||||||||    
27658524 aataatgaaggaatcatctcacccc 27658500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 773 - 880
Target Start/End: Complemental strand, 33602528 - 33602427
Alignment:
773 aaaaacatatttaatcgtttaatatttcatttcactatttcgctatttgccagctcatacttctaaccgtttcttattcacttttgccgccatataacaa 872  Q
    ||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
33602528 aaaaacatatttaatcgtttaatatttcatttcat------gctatttgccagctcatacttctaatcgtttcttattcacttttgccgccatataacaa 33602435  T
873 accatatt 880  Q
    ||||||||    
33602434 accatatt 33602427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 691 - 750
Target Start/End: Complemental strand, 27656903 - 27656844
Alignment:
691 tattgagtaatagtgtatggtgtcatttttgtgtttgtatttttgtgtttacttatcatt 750  Q
    ||||||| || ||| |||||| ||||||||||||||||||||||||||||||||||||||    
27656903 tattgaggaacagtctatggtatcatttttgtgtttgtatttttgtgtttacttatcatt 27656844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 237; Significance: 1e-130; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-130
Query Start/End: Original strand, 298 - 613
Target Start/End: Original strand, 37605628 - 37605941
Alignment:
298 tttgggtttaggattttttatcttcttcttatctactaagaatcaaaccaacgtttagcacaacaaggtataacaacaattacaagccactgaaattcta 397  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
37605628 tttgggtttaggaatttttttcttcttcttatctactaagaatcaaaccaaagtttagcacaacaaggtataacaacaattacaagccactgaaattcta 37605727  T
398 aaaacaagaacagagaaaggaaaaaacctgggtatgaaaacaaggagatgaatatggcgtcgcagccgagacaggcggagtgaccgaaaatagcatgaga 497  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||   |||||||||||| ||| |||| |||||||||||||||  ||    
37605728 aaaacaagaacagagaaaggaaaaaacctgggtatgaaaacaaggagaggaatatgaaatcgcagccgagataggtggagcgaccgaaaatagcat--ga 37605825  T
498 gggtggtactgtacaaagatgaagaaggagtgacgagaagctatgagtgaatgaaagataatttgttcttgcttataggaaatgagtgaatcagagagag 597  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||| ||||||||||||||| ||||| ||||    
37605826 gggtggcactgtacaaagatgaagaaggagtgacgagaacctatgagtgaatgaaagatgattttttcttgctcataggaaatgagtgattcagaaagag 37605925  T
598 ggaaggaaaacgaaac 613  Q
    ||||||||||||||||    
37605926 ggaaggaaaacgaaac 37605941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 175; E-Value: 1e-93
Query Start/End: Original strand, 10 - 234
Target Start/End: Original strand, 37605341 - 37605564
Alignment:
10 aaaatacaagagaaaaattgtaacacaaaattgattatggggtattagatttaagtattagctattttgaagtctataatcatgcaattaagttgagaaa 109  Q
    ||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
37605341 aaaatacaagagaaacattgtaacacaa--ttgattatggggtattagatttaagtattagctgtgttgaagtctataatcatgcaattaagttgagaaa 37605438  T
110 attaatattgaacatattcagtatat-aaatcttaatcaacttcatcatttcgtcaattcaaaaatttagggtttttaattagaaatttggggaaaacga 208  Q
    |||||||||||| ||||||||||||| ||| ||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
37605439 attaatattgaatatattcagtatataaaaccttaatcaatttcatcatttagtcaattcaaaaatttagggtttttaatttgaaatttggggaaaacga 37605538  T
209 aaataatgaaggaatcatctcacccc 234  Q
    ||||||||||||||||||||||||||    
37605539 aaataatgaaggaatcatctcacccc 37605564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 49 - 234
Target Start/End: Original strand, 33360553 - 33360739
Alignment:
49 gggtattagatttaagtattagctattttgaagtctataatcatgcaattaagttgagaaaattaatattgaacatattcagtatat-aaatcttaatca 147  Q
    |||||| |||||||||||||||| || |  |||||| |||||||| |||||||||||||||||||||||||| |||||||| ||||| ||| || |||||    
33360553 gggtatcagatttaagtattagcaatgtctaagtctgtaatcatgaaattaagttgagaaaattaatattgagcatattcattatataaaacctgaatca 33360652  T
148 acttcatcatttcgtcaattcaaaaatttagggtttttaattagaaatttggggaaaacgaaaataatgaaggaatcatctcacccc 234  Q
    | ||||| |||| ||||||||||||||||||||||| | |||  ||||| ||||||||||||||| ||||||||| |||||||||||    
33360653 atttcattatttagtcaattcaaaaatttagggtttgtgatttaaaattgggggaaaacgaaaatgatgaaggaaccatctcacccc 33360739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 46 - 234
Target Start/End: Complemental strand, 5742984 - 5742798
Alignment:
46 atggggtattagatttaagtattagctattttgaagtctataatcatgcaattaagttgagaaaattaatattgaacatattcagtatataaatcttaat 145  Q
    ||||||||| | |||||||||||||| || |  |||| | |||||||| |||||||||||||||||||||||||| |||||||| |||| ||| | |       
5742984 atggggtatcaaatttaagtattagcaatatctaagtttgtaatcatgaaattaagttgagaaaattaatattgagcatattcattataaaaaacct--g 5742887  T
146 caacttcatcatttcgtcaattcaaaaatttagggtttttaattagaaatttggggaaaacgaaaataatgaaggaatcatctcacccc 234  Q
    ||| ||||| |||| ||||||| ||||||||||||||| | ||| |||||| ||||||||||||||| ||||||| | ||||| |||||    
5742886 caatttcattatttagtcaattaaaaaatttagggtttgtgatttgaaattgggggaaaacgaaaatgatgaagggaccatcttacccc 5742798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 337 - 601
Target Start/End: Original strand, 33360837 - 33361104
Alignment:
337 gaatcaaaccaacgtttagcacaac-aaggtataacaacaattacaagccactgaaattctaaaaacaagaacagagaaaggaaaaaacctgggtatgaa 435  Q
    |||||||||||||||||  | |||| |||||| ||||| || ||||||| ||| |||||||||||||||||  |||||||||||| |||||| | |||||    
33360837 gaatcaaaccaacgttttcctcaaccaaggtaaaacaataactacaagctactaaaattctaaaaacaagagtagagaaaggaaagaacctgagcatgaa 33360936  T
436 aacaaggag---------atgaatatggcgtcgcagccgagacaggcggagtgaccgaaaatagcatgagagggtggtactgtacaaagatgaagaagga 526  Q
    ||| |||||         | ||||| || ||  | || |   |||  ||||||||||||| |||||||||||| ||| |||| ||||||||||||   ||    
33360937 aacgaggaggaacagtggaggaatacggtgttacggcgg---cagctggagtgaccgaaa-tagcatgagaggctggcactgcacaaagatgaag---ga 33361029  T
527 gtgacgagaagctatgagtgaatgaaagataatttgttcttgcttataggaaatgagtgaatcagagagagggaa 601  Q
    ||||||||||  ||| |||||||||||||| ||||||||||| | || |||||||| ||||||||| ||||||||    
33361030 gtgacgagaaattattagtgaatgaaagattatttgttcttggtaatgggaaatgactgaatcagaaagagggaa 33361104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 474 - 601
Target Start/End: Complemental strand, 5742556 - 5742432
Alignment:
474 ggagtgaccgaaaatagcatgagagggtggtactgtacaaagatgaagaaggagtgacgagaagctatgagtgaatgaaagataatttgttcttgcttat 573  Q
    |||||||| | ||||||||||||||||||| |||| ||||||||||||   |||||| ||| | |||  |||||||||||||| ||| |||||| || ||    
5742556 ggagtgactggaaatagcatgagagggtggcactgcacaaagatgaag---gagtgatgagcaactactagtgaatgaaagatgattagttctttctcat 5742460  T
574 aggaaatgagtgaatcagagagagggaa 601  Q
    ||||||| ||||||||||| ||||||||    
5742459 aggaaattagtgaatcagaaagagggaa 5742432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 691 - 755
Target Start/End: Original strand, 37606029 - 37606093
Alignment:
691 tattgagtaatagtgtatggtgtcatttttgtgtttgtatttttgtgtttacttatcattcctgt 755  Q
    |||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
37606029 tattgagtaacagtgtatggtgtcatatttgtgtttgtattattgtgtttacttatcattcctgt 37606093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 337 - 444
Target Start/End: Complemental strand, 5742700 - 5742592
Alignment:
337 gaatcaaaccaacgtttagcacaac-aaggtataacaacaattacaagccactgaaattctaaaaacaagaacagagaaaggaaaaaacctgggtatgaa 435  Q
    ||||||||| |||||||  | |||| || ||| ||||| || ||||| | ||| |||||||||||||||||  |||||||||||| |||||| | |||||    
5742700 gaatcaaacaaacgtttttctcaaccaacgtaaaacaataactacaaactactaaaattctaaaaacaagagtagagaaaggaaagaacctgagcatgaa 5742601  T
436 aacaaggag 444  Q
    |||||||||    
5742600 aacaaggag 5742592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 711 - 753
Target Start/End: Complemental strand, 30891806 - 30891764
Alignment:
711 tgtcatttttgtgtttgtatttttgtgtttacttatcattcct 753  Q
    |||| |||||||||||||||||||||||| |||||||||||||    
30891806 tgtcgtttttgtgtttgtatttttgtgttcacttatcattcct 30891764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 5e-46; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 49 - 234
Target Start/End: Original strand, 18084829 - 18085015
Alignment:
49 gggtattagatttaagtattagctattttgaagtctataatcatgcaattaagttgagaaaattaatattgaacatattcagtatat-aaatcttaatca 147  Q
    |||||| |||||||||||||||| || |  |||||| |||||||| |||||||||||||||||||||||||| |||||||| ||||| ||| || |||||    
18084829 gggtatcagatttaagtattagcaatgtctaagtctgtaatcatgaaattaagttgagaaaattaatattgagcatattcattatataaaacctgaatca 18084928  T
148 acttcatcatttcgtcaattcaaaaatttagggtttttaattagaaatttggggaaaacgaaaataatgaaggaatcatctcacccc 234  Q
    | ||||| |||| ||||||||||||||||||||||| | |||  ||||| ||||||||||||||| ||||||||| |||||||||||    
18084929 atttcattatttagtcaattcaaaaatttagggtttgtgatttaaaattgggggaaaacgaaaatgatgaaggaaccatctcacccc 18085015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 474 - 601
Target Start/End: Original strand, 18085257 - 18085380
Alignment:
474 ggagtgaccgaaaatagcatgagagggtggtactgtacaaagatgaagaaggagtgacgagaagctatgagtgaatgaaagataatttgttcttgcttat 573  Q
    ||||||||||||| |||||||||||| ||| |||| ||||||||||||   ||||||||||||  ||| |||||||||||||| ||||||||||| | ||    
18085257 ggagtgaccgaaa-tagcatgagaggctggcactgcacaaagatgaag---gagtgacgagaaattattagtgaatgaaagattatttgttcttggtaat 18085352  T
574 aggaaatgagtgaatcagagagagggaa 601  Q
     |||||||| ||||||||| ||||||||    
18085353 gggaaatgactgaatcagaaagagggaa 18085380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 691 - 755
Target Start/End: Complemental strand, 31559546 - 31559482
Alignment:
691 tattgagtaatagtgtatggtgtcatttttgtgtttgtatttttgtgtttacttatcattcctgt 755  Q
    |||||||||| ||||||||||||||| ||| |||||||||| |||||||||||||||||||||||    
31559546 tattgagtaacagtgtatggtgtcatatttatgtttgtattattgtgtttacttatcattcctgt 31559482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 337 - 444
Target Start/End: Original strand, 18085113 - 18085221
Alignment:
337 gaatcaaaccaacgtttagcacaac-aaggtataacaacaattacaagccactgaaattctaaaaacaagaacagagaaaggaaaaaacctgggtatgaa 435  Q
    |||||||||||||||||  | |||| |||||| ||||| || ||||||| ||| |||||||||||||||||  |||||||||||| |||||| | |||||    
18085113 gaatcaaaccaacgttttcctcaaccaaggtaaaacaataactacaagctactaaaattctaaaaacaagagtagagaaaggaaagaacctgagcatgaa 18085212  T
436 aacaaggag 444  Q
    ||| |||||    
18085213 aacgaggag 18085221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0856 (Bit Score: 91; Significance: 1e-43; HSPs: 2)
Name: scaffold0856
Description:

Target: scaffold0856; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 49 - 234
Target Start/End: Original strand, 800 - 986
Alignment:
49 gggtattagatttaagtattagctattttgaagtctataatcatgcaattaagttgagaaaattaatattgaacatattcagtatat-aaatcttaatca 147  Q
    |||||| |||||||||||||||| || |  |||||| |||||||| |||||||||||||||||||||||||| |||||||| ||||| ||| || |||||    
800 gggtatcagatttaagtattagcaatgtctaagtctgtaatcatgaaattaagttgagaaaattaatattgagcatattcattatataaaacctgaatca 899  T
148 acttcatcatttcgtcaattcaaaaatttagggtttttaattagaaatttggggaaaacgaaaataatgaaggaatcatctcacccc 234  Q
    | ||||| |||| || |||||||||||||||||||| | |||  ||||| ||||||||||||||| ||||||||| |||||||||||    
900 atttcattatttagtaaattcaaaaatttagggtttgtgatttaaaattgggggaaaacgaaaatgatgaaggaaccatctcacccc 986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0856; HSP #2
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 337 - 601
Target Start/End: Original strand, 1084 - 1351
Alignment:
337 gaatcaaaccaacgtttagcacaac-aaggtataacaacaattacaagccactgaaattctaaaaacaagaacagagaaaggaaaaaacctgggtatgaa 435  Q
    |||||||||||||||||  | |||| |||||| ||||| || ||||||| ||| |||||||||||||||||  |||||||||||| |||||| | |||||    
1084 gaatcaaaccaacgttttcctcaaccaaggtaaaacaataactacaagctactaaaattctaaaaacaagagtagagaaaggaaagaacctgagcatgaa 1183  T
436 aacaaggag---------atgaatatggcgtcgcagccgagacaggcggagtgaccgaaaatagcatgagagggtggtactgtacaaagatgaagaagga 526  Q
    ||| |||||         | ||||| |||||  | || |   |||  ||||||||||||| |||||||||||| ||| |||| ||||||||||||   ||    
1184 aacgaggaggaacagtggaggaatacggcgttacggcgg---cagctggagtgaccgaaa-tagcatgagaggctggcactgcacaaagatgaag---ga 1276  T
527 gtgacgagaagctatgagtgaatgaaagataatttgttcttgcttataggaaatgagtgaatcagagagagggaa 601  Q
    ||||||||||  ||| |||||||||||||| ||||||||||| | || |||||||| ||||||||| ||||||||    
1277 gtgacgagaaattattagtgaatgaaagatgatttgttcttgatcatgggaaatgactgaatcagaaagagggaa 1351  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 716 - 753
Target Start/End: Complemental strand, 7453604 - 7453567
Alignment:
716 tttttgtgtttgtatttttgtgtttacttatcattcct 753  Q
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7453604 tttttgtgtttgtatttttgtgttcacttatcattcct 7453567  T

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