View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18857_low_20 (Length: 258)
Name: NF18857_low_20
Description: NF18857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18857_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 12 - 241
Target Start/End: Original strand, 38369299 - 38369531
Alignment:
| Q |
12 |
aagaatatcgttaattataatgtatttcaaaggtaaatgcaaaattattgtattttaggttcttcaattaaataatttagtctttaatttaagccaatgg |
111 |
Q |
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| T |
38369299 |
aagaatatcgttaattataatgtatttcaaaggtaaatgcaaaattattgtattttaggttctacaattaaataatttagtctttaatttaagccaatgg |
38369398 |
T |
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| Q |
112 |
acccagtacccgaaattcaacaatacattcattcatata---tactacacttcaagcgctctctcctcttttggagggggctacatgaacatgacttctt |
208 |
Q |
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| T |
38369399 |
acccagtacccgaaattcaacaatacattcattcatatatactactacacttcaagctctctctcctcttttggagggggctacatgaacatgacttctt |
38369498 |
T |
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| Q |
209 |
caaacaaattacaaataattgcacaccaaaatc |
241 |
Q |
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| T |
38369499 |
catacaaattacaaataattgcacaccaaaatc |
38369531 |
T |
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