View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18857_low_3 (Length: 784)
Name: NF18857_low_3
Description: NF18857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18857_low_3 |
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| [»] scaffold0530 (1 HSPs) |
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Alignment Details
Target: scaffold0530 (Bit Score: 671; Significance: 0; HSPs: 1)
Name: scaffold0530
Description:
Target: scaffold0530; HSP #1
Raw Score: 671; E-Value: 0
Query Start/End: Original strand, 1 - 768
Target Start/End: Original strand, 6445 - 7202
Alignment:
| Q |
1 |
tatgaatatagggatctaaatcgaagaaaacaaaattgcagtttcaaaattatgatattattttcttaccattgagagagcatactgaatcaaacgatta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6445 |
tatgaatatagggatctaaatcgaagaaaacaaaattgcagtttcaaaattatgatattattttcttaccattgagagagcatactgaatcaaacgatta |
6544 |
T |
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| Q |
101 |
aaagcagacgcaccccctggctgcagaaaa-aacaaaagaatgagtagttaaaactatcaaaggtgcaaaaataactacacactgatcatgaatataacc |
199 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
6545 |
aaagcagacgcaccccctggctgcagaaaaaaacaaaagaatgagtagttaaaactatcaaaggtgcaaaattaactacacactgatcatgaatataacc |
6644 |
T |
|
| Q |
200 |
ttggaatcaagtagccgaaatagaagattttgtagggctggcaattgctccagcaattccttggtgtcgagcttttgggaattgctctgtatatatagaa |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6645 |
ttggaatcaagtagccgaaatagaagattttgtagggctggcaattgctccagcagttccttggtgtcaagcttttgggaattgctctgtatatatagaa |
6744 |
T |
|
| Q |
300 |
ttaaaagtggattaatattttgttaagaaatcataatagaaataaatgataatacttatgtagaaaaagtcaattttcaatgtttcaaagtgttgattgc |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6745 |
ttaaaagtggattaatattttgttaagaaatcataatagaaataaatgataatatttatgtagaaaaagtcaattttcaatgtttcaaagtgttgattgc |
6844 |
T |
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| Q |
400 |
atcattttcatgataaaatttcttttttgagcttcttaacaagtgctcaatagcaaattaagaatccaatggaggaacaaactatgtaagcaaagtattg |
499 |
Q |
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| T |
6845 |
atcattttcatgataaaatttcttttttgag-----------ttgctcaatagcaaattaagaatccaatggaggaacaaactatgtaagcaaagtattg |
6933 |
T |
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| Q |
500 |
aaaattgaacaggtacattcaagtaaagcaactctataatgatgcatacaaatacatatatgaaactaaccaattctatggatttattttggcgaaacaa |
599 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
6934 |
aaaaatgaacaggtacattcaagtaaagcaactctataatgatgcatacaaatacatatatgaaactaaccaattctatggatttattttagcgaaacaa |
7033 |
T |
|
| Q |
600 |
taaatgtttaatttacgaaactaaatttcccgatccttacaatccgaggatcaaaatcatgctgatacactaaggaaaaagaaacaaaaagaatatgaac |
699 |
Q |
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| T |
7034 |
taaatgtttaatttacgaaactaaatttcccgatccttacaatccaaggatcaaaatcatgctgatacactatggaaaaggcaacaaaaagaatatgagc |
7133 |
T |
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| Q |
700 |
ttactggggtataagctgcaacatcatggttgactatgataaaacatcgtaggcgctctccgaggaaaa |
768 |
Q |
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| T |
7134 |
ttactggggtataagctgcaacatcatggttgactatgataaaacatcgtaggcgttctccgaggaaaa |
7202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 321 - 442
Target Start/End: Original strand, 36832816 - 36832935
Alignment:
| Q |
321 |
gttaagaaatcataatagaaataaatgataatacttatgtagaaaaagtcaattttcaatgtttcaaagtgttgattgcatcattttcatgataaaattt |
420 |
Q |
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|||||||| ||| ||||||||||||| |||| ||||||||||||||| ||||| || ||||||| || |||| ||||||||||| | |||||| ||| |
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| T |
36832816 |
gttaagaactca-aatagaaataaattataaattttatgtagaaaaagttcatttttaa-gtttcaatgtattgaatgcatcatttttaagataaacttt |
36832913 |
T |
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| Q |
421 |
cttttttgagcttcttaacaag |
442 |
Q |
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| T |
36832914 |
ctcttttgagctttttaacaag |
36832935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 334 - 395
Target Start/End: Original strand, 35884268 - 35884329
Alignment:
| Q |
334 |
aatagaaataaatgataatacttatgtagaaaaagtcaattttcaatgtttcaaagtgttga |
395 |
Q |
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| T |
35884268 |
aatagaaataaattataaatttgatgtagaaaaagtctattttaaaagtttcaaagtgttga |
35884329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 355 - 445
Target Start/End: Complemental strand, 1863182 - 1863092
Alignment:
| Q |
355 |
ttatgtagaaaaagtcaattttcaatgtttcaaagtgttgattgcatcattttcatgataaaatttcttttttgagcttcttaacaagtgc |
445 |
Q |
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| T |
1863182 |
ttatgtagataaagttactttttaaactttcaatgtgttgaatacatcatttccaagataaaatttattttttaaacttcttaacaagtgc |
1863092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 334 - 395
Target Start/End: Complemental strand, 19608875 - 19608814
Alignment:
| Q |
334 |
aatagaaataaatgataatacttatgtagaaaaagtcaattttcaatgtttcaaagtgttga |
395 |
Q |
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| T |
19608875 |
aatagaaataattgataatttttatgtagaaaaagttactttttaatgtttcaatgtgttga |
19608814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 357 - 445
Target Start/End: Complemental strand, 24093869 - 24093782
Alignment:
| Q |
357 |
atgtagaaaaagtcaattttcaatgtttcaaagtgttgattgcatcattttcatgataaaatttcttttttgagcttcttaacaagtgc |
445 |
Q |
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| T |
24093869 |
atgtagaaaaagttcattttaaa-gtttcaaggtgttgaatacatcattcccaagataaactttctcttttaagcttcttaacaagtgc |
24093782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 334 - 445
Target Start/End: Complemental strand, 9596404 - 9596293
Alignment:
| Q |
334 |
aatagaaataaatgataatacttatgtagaaaaagtcaattttcaatgtttcaaagtgttgattgcatcattttcatgataaaatttcttttttgagctt |
433 |
Q |
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||||||||||||| |||| | |||| |||||||| ||||| || |||||| ||||||| | |||||| | | |||||| |||||||||| ||||| |
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| T |
9596404 |
aatagaaataaattataaatttgatgtggaaaaagttcatttttaaagtttcatggtgttgaatacatcatctctaagataaactttcttttttaagctt |
9596305 |
T |
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| Q |
434 |
cttaacaagtgc |
445 |
Q |
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| T |
9596304 |
cttaacaagtgc |
9596293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 359 - 444
Target Start/End: Complemental strand, 28102974 - 28102889
Alignment:
| Q |
359 |
gtagaaaaagtcaattttcaatgtttcaaagtgttgattgcatcattttcatgataaaatttcttttttgagcttcttaacaagtg |
444 |
Q |
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| T |
28102974 |
gtagaaaaagtacattttaaaagttttaaggtgttgaatgcatcattaataagataaattttcttttttaagtttcttaacaagtg |
28102889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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