View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18857_low_4 (Length: 744)

Name: NF18857_low_4
Description: NF18857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18857_low_4
NF18857_low_4
[»] chr5 (12 HSPs)
chr5 (10-732)||(20420923-20421645)
chr5 (367-601)||(20159695-20159929)
chr5 (368-496)||(13402481-13402609)
chr5 (110-262)||(11273526-11273683)
chr5 (161-275)||(20161874-20161988)
chr5 (418-510)||(6374585-6374676)
chr5 (659-719)||(18263311-18263371)
chr5 (12-77)||(14218393-14218458)
chr5 (660-716)||(28197236-28197292)
chr5 (634-725)||(20159473-20159564)
chr5 (12-97)||(20162489-20162575)
chr5 (468-525)||(33937009-33937066)
[»] chr4 (13 HSPs)
chr4 (329-601)||(5317877-5318158)
chr4 (371-601)||(54254112-54254342)
chr4 (603-732)||(5318252-5318374)
chr4 (659-727)||(21178635-21178703)
chr4 (418-510)||(41784629-41784721)
chr4 (433-512)||(21178323-21178402)
chr4 (600-727)||(18777822-18777951)
chr4 (160-246)||(24902807-24902893)
chr4 (634-732)||(54254465-54254563)
chr4 (359-521)||(25658922-25659084)
chr4 (442-518)||(43609657-43609733)
chr4 (440-492)||(47534343-47534395)
chr4 (13-78)||(18773215-18773281)
[»] chr3 (13 HSPs)
chr3 (367-601)||(51409987-51410221)
chr3 (331-528)||(30540459-30540660)
chr3 (329-601)||(49436023-49436305)
chr3 (418-530)||(30531081-30531193)
chr3 (654-727)||(9193993-9194066)
chr3 (371-512)||(21543905-21544046)
chr3 (442-530)||(7470748-7470836)
chr3 (634-732)||(23953347-23953445)
chr3 (422-510)||(27934058-27934146)
chr3 (12-52)||(34085627-34085667)
chr3 (445-497)||(41731025-41731077)
chr3 (443-530)||(7487211-7487298)
chr3 (654-723)||(9193821-9193890)
[»] chr8 (21 HSPs)
chr8 (107-308)||(10363650-10363851)
chr8 (329-601)||(27675458-27675732)
chr8 (371-530)||(6662256-6662415)
chr8 (371-530)||(6742658-6742817)
chr8 (158-312)||(21401322-21401476)
chr8 (158-312)||(21795815-21795969)
chr8 (418-534)||(22208811-22208927)
chr8 (600-732)||(44015412-44015544)
chr8 (368-530)||(6586576-6586736)
chr8 (367-527)||(29671044-29671201)
chr8 (14-99)||(10363120-10363206)
chr8 (418-510)||(30944650-30944742)
chr8 (24-81)||(18327767-18327824)
chr8 (449-512)||(4472961-4473024)
chr8 (418-528)||(24619254-24619364)
chr8 (106-202)||(13866982-13867078)
chr8 (418-510)||(15893184-15893276)
chr8 (35-95)||(21401975-21402035)
chr8 (35-95)||(21796468-21796528)
chr8 (654-712)||(29671398-29671456)
chr8 (550-601)||(29671216-29671267)
[»] chr6 (10 HSPs)
chr6 (442-601)||(8356566-8356725)
chr6 (444-590)||(7648180-7648326)
chr6 (329-518)||(2289131-2289329)
chr6 (442-518)||(31198257-31198333)
chr6 (634-732)||(2286135-2286233)
chr6 (654-712)||(7647961-7648019)
chr6 (678-727)||(8356901-8356950)
chr6 (442-518)||(31177645-31177721)
chr6 (12-52)||(31519410-31519450)
chr6 (329-405)||(7648368-7648447)
[»] scaffold1190 (1 HSPs)
scaffold1190 (371-530)||(2043-2202)
[»] chr2 (8 HSPs)
chr2 (329-535)||(19506973-19507189)
chr2 (13-70)||(41634430-41634487)
chr2 (634-732)||(19507351-19507449)
chr2 (106-192)||(19989094-19989180)
chr2 (418-521)||(41634275-41634377)
chr2 (447-582)||(36342256-36342391)
chr2 (417-521)||(31101119-31101223)
chr2 (676-713)||(36342657-36342694)
[»] scaffold0070 (2 HSPs)
scaffold0070 (600-732)||(45598-45730)
scaffold0070 (418-502)||(45918-46003)
[»] chr1 (4 HSPs)
chr1 (371-507)||(38810462-38810598)
chr1 (444-512)||(25140947-25141015)
chr1 (442-494)||(25233707-25233759)
chr1 (442-495)||(46978692-46978745)
[»] chr7 (8 HSPs)
chr7 (445-510)||(29248976-29249041)
chr7 (35-81)||(2835657-2835703)
chr7 (442-518)||(20904676-20904752)
chr7 (105-187)||(2836171-2836253)
chr7 (106-187)||(23558632-23558713)
chr7 (677-732)||(33202305-33202360)
chr7 (233-270)||(20905687-20905724)
chr7 (662-711)||(26154189-26154238)
[»] scaffold0156 (2 HSPs)
scaffold0156 (12-99)||(24026-24113)
scaffold0156 (12-81)||(18427-18497)


Alignment Details
Target: chr5 (Bit Score: 662; Significance: 0; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 662; E-Value: 0
Query Start/End: Original strand, 10 - 732
Target Start/End: Original strand, 20420923 - 20421645
Alignment:
Q  10 aagaatattctaacggatttgaaagaaaaaacaaagaaagtgtaacgaatataaaacaagtgtacaatgcacatgctagatggcgaaagtataaaggaag 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20420923 aagaatattctaacggatttgaaagaaaaaacaaagaaagtgtaacgaatataaaacaagtgtacaatgcacatgctagatggcgaaagtataaaggaag 20421022  T
Q  110 aatgtaagagctaagtgcaccacgaattgcagagtcaaactaaatccaaaggatgtaaaagttgatgggaaagaagtgtagaaaatgaaggagatgaaga 209  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  20421023 aatgtaagagctaagtgcatcacgaattgcagagtcaaactaaatccaaaggatgtaaaagttgatgggaaagaagtgtagaaaatgaaggagacgaaga 20421122  T
Q  210 caagtgacgtcgttgaaaacatcatgagagcttgggaagatatggttgaatctcctacaaaggattaaagtataagtgcagtaacgcgattttgagatgt 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  20421123 caagtgacgtcgttgaaaacatcatgagagcttgggaagatatggttgaatctcctacaaaggattaaaatataagtgcagtaacacgattttgagatgt 20421222  T
Q  310 atgnnnnnnnttcccaaagttccataaacttttgtgaagtgaaacattaaagatgcagaagttgaagctcatgtccgatactgcgccttcaagaagtaga 409  Q
    |||       |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20421223 atgaaaaaaattcccaaagttccataaacttttgtgaagtgaaacattcaagatgcagaagttgaagctcatgtccgatactgcgccttcaagaagtaga 20421322  T
Q  410 ttaatgcttttttaacccacactgacaatttcgatgagttgaaggcacaacttagcaaatactttgtacatcttggtgaaaatcaaagaacatctcatgt 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20421323 ttaatgcttttttaacccacactgacaatttcgatgagttgaaggcacaacttagcaaatactttgtacatcttggtgaaaatcaaagaacatctcatgt 20421422  T
Q  510 attcgtacaagtgtcatgcgtcaatcaagcggcggataaagattaagacagttggaagaccatgtgttttccacaacttatccatgatgatgtaatatgt 609  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  20421423 attcgtacaagtgtcatgcgtcaatcaagcggcggataaagattaagacagttggaagaccatgtattttccacaacttatccatgatgatgtaatatgt 20421522  T
Q  610 tcaaatttgtgctcgtaatgatgccttttaatgaaattcaaacttttgaggattgtgtattcaacaacgaatttgtgtaatttggattcattatgtgtga 709  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||    
T  20421523 tcaaatttgtgctcgtaatgatgccttttaatgaaattcaaacttttgaggattgtgtatttaacaacgaatttgtgtaatttggattcattatgtatga 20421622  T
Q  710 ttatgttatgatgagtatgatga 732  Q
    |||||||| ||||||||| ||||    
T  20421623 ttatgttacgatgagtattatga 20421645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 367 - 601
Target Start/End: Complemental strand, 20159929 - 20159695
Alignment:
Q  367 gaagttgaagctcatgtccgatactgcgccttcaagaagtagattaatgcttttttaacccacactgacaatttcgatgagttgaaggcacaacttagca 466  Q
    ||||||||||||||||| |||||||  ||||||| ||||  |||||| | ||||||||||| |||| |||| || |||||||||||| ||||||||  ||    
T  20159929 gaagttgaagctcatgttcgatactctgccttcatgaagacgattaaggtttttttaacccccactaacaaattggatgagttgaagacacaacttgaca 20159830  T
Q  467 aatactttgtacatcttggtgaaaatcaaagaacatctcatgtattcgtacaagtgtcatgcgtcaatcaagcggcggataaagattaagacagttggaa 566  Q
     |||||||   ||||||||||||||||||||| ||||||||||||| ||||| |||||||| || | || || || |||||||||| |||||| ||||||    
T  20159829 gatacttttcccatcttggtgaaaatcaaagagcatctcatgtatttgtacaggtgtcatgtgtaagtctaggggaggataaagatgaagacaattggaa 20159730  T
Q  567 gaccatgtgttttccacaacttatccatgatgatg 601  Q
    |||||| | ||||||| || |||| | ||||||||    
T  20159729 gaccatttattttccaaaaattattcctgatgatg 20159695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 368 - 496
Target Start/End: Complemental strand, 13402609 - 13402481
Alignment:
Q  368 aagttgaagctcatgtccgatactgcgccttcaagaag-tagattaatgcttttttaacccacactgacaatttcgatgagttgaaggcacaacttagca 466  Q
    |||||||||||||||||   |||| |||||| |||| | ||| |||| | ||||||| ||| |||| |||| || |||||||||||| ||||||||| ||    
T  13402609 aagttgaagctcatgtcaagtactccgcctttaagaggatag-ttaaagtttttttagcccccactaacaagttggatgagttgaagacacaacttaaca 13402511  T
Q  467 aatactttgtacatcttggtgaaaatcaaa 496  Q
    |||||||||| |||||||||||||||||||    
T  13402510 aatactttgtccatcttggtgaaaatcaaa 13402481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 262
Target Start/End: Original strand, 11273526 - 11273683
Alignment:
Q  110 aatgtaagagctaagtgcaccacgaattgcagagtcaaactaaatccaaaggatgtaaaagttgatggg------aaagaagtgtagaaaatgaaggaga 203  Q
    |||||||||||||| |||| ||||| | |||| |||||| | || ||||| ||||||||||||||||||      ||||||||| || |||||||||||     
T  11273526 aatgtaagagctaaatgcatcacgact-gcagtgtcaaaatgaagccaaatgatgtaaaagttgatgggaaagataaagaagtgaaggaaatgaaggagg 11273624  T
Q  204 tgaagacaagtgacgtcgttgaaaacatcatgagagcttgggaagatatggttgaatct 262  Q
    ||||| || ||||| | ||| | || ||||||||||||||||| ||  |||||||||||    
T  11273625 tgaaggcaggtgacatagttaacaatatcatgagagcttgggatgacgtggttgaatct 11273683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 275
Target Start/End: Complemental strand, 20161988 - 20161874
Alignment:
Q  161 gatgtaaaagttgatgggaaagaagtgtagaaaatgaaggagatgaagacaagtgacgtcgttgaaaacatcatgagagcttgggaagatatggttgaat 260  Q
    ||||||||| || || ||||||||||| || ||  ||||||  ||||| |||||||| | ||| | || |||||||||| |||||| ||| ||||| |||    
T  20161988 gatgtaaaatttaataggaaagaagtgaaggaagagaaggatgtgaaggcaagtgacatagttaacaaaatcatgagagtttgggatgatgtggttaaat 20161889  T
Q  261 ctcctacaaaggatt 275  Q
    |||||||||||||||    
T  20161888 ctcctacaaaggatt 20161874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 418 - 510
Target Start/End: Original strand, 6374585 - 6374676
Alignment:
Q  418 tttttaacccacactgacaatttcgatgagttgaaggcacaacttagcaaatactttgtacatcttggtgaaaatcaaagaacatctcatgta 510  Q
    |||||||||| ||||||||| || || ||||||||||||| | ||| |||||||||| | ||| ||  |||||||||||||| ||||||||||    
T  6374585 tttttaacccccactgacaagttggacgagttgaaggcac-atttaacaaatactttatccatattcatgaaaatcaaagaatatctcatgta 6374676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 659 - 719
Target Start/End: Complemental strand, 18263371 - 18263311
Alignment:
Q  659 ggattgtgtattcaacaacgaatttgtgtaatttggattcattatgtgtgattatgttatg 719  Q
    |||||||||||| ||| |||||||| ||||||||||||  ||||||||| |||||||||||    
T  18263371 ggattgtgtatttaacgacgaatttatgtaatttggatcgattatgtgtaattatgttatg 18263311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 14218458 - 14218393
Alignment:
Q  12 gaatattctaacggatttgaaagaaaaaacaaagaaagtgtaacgaatataaaacaagtgtacaat 77  Q
    ||||||||| ||| |||||||  |||||||||||||||| | |||||||| |||| ||||||||||    
T  14218458 gaatattctcacgaatttgaagcaaaaaacaaagaaagtttgacgaatatcaaacgagtgtacaat 14218393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 660 - 716
Target Start/End: Original strand, 28197236 - 28197292
Alignment:
Q  660 gattgtgtattcaacaacgaatttgtgtaatttggattcattatgtgtgattatgtt 716  Q
    ||||||||| ||||  |||||||||||||||||||||  ||||||| ||||||||||    
T  28197236 gattgtgtaatcaatgacgaatttgtgtaatttggatcgattatgtatgattatgtt 28197292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 634 - 725
Target Start/End: Complemental strand, 20159564 - 20159473
Alignment:
Q  634 cttttaatgaaattcaaacttttgaggattgtgtattcaacaacgaatttgtgtaatttggattcattatgtgtgattatgttatgatgagt 725  Q
    ||||| || |||||||| |||||| |||||||||||  ||  || |||| |||||||||||||  | |||| ||||||||||||| ||||||    
T  20159564 cttttgattaaattcaatcttttgtggattgtgtatgtaatgacaaattggtgtaatttggatcaactatgagtgattatgttattatgagt 20159473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 97
Target Start/End: Complemental strand, 20162575 - 20162489
Alignment:
Q  12 gaatattctaacggatttgaaagaaaaaaca-aagaaagtgtaacgaatataaaacaagtgtacaatgcacatgctagatggcgaaa 97  Q
    ||||||||| | ||||||||| |||||||   || ||||| | |||||||||||||||| |||| |||||| |||||||| ||||||    
T  20162575 gaatattctcatggatttgaaggaaaaaaatcaataaagtttgacgaatataaaacaagcgtactatgcacgtgctagattgcgaaa 20162489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 468 - 525
Target Start/End: Original strand, 33937009 - 33937066
Alignment:
Q  468 atactttgtacatcttggtgaaaatcaaagaacatctcatgtattcgtacaagtgtca 525  Q
    ||||||| | ||| ||||||| ||||||||||||||||||||| | ||||| ||||||    
T  33937009 atactttatccatattggtgacaatcaaagaacatctcatgtagtagtacatgtgtca 33937066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 145; Significance: 6e-76; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 329 - 601
Target Start/End: Original strand, 5317877 - 5318158
Alignment:
Q  329 ttccataaacttttgtgaagtgaaacat---taaagatgcagaagttg------aagctcatgtccgatactgcgccttcaagaagtagattaatgcttt 419  Q
    ||||||||||||||||||| ||||||||   | |||||||||||||||      ||||||||||||||||||  |||||||||||| ||||||| |||||    
T  5317877 ttccataaacttttgtgaaatgaaacatgtctcaagatgcagaagttgacgttgaagctcatgtccgatactttgccttcaagaagaagattaaggcttt 5317976  T
Q  420 tttaacccacactgacaatttcgatgagttgaaggcacaacttagcaaatactttgtacatcttggtgaaaatcaaagaacatctcatgtattcgtacaa 519  Q
    |||||||  ||| || ||||| |||||||||||||||||||||| || ||| ||||| |||||||| ||||||||||||| |||||||||||| ||||||    
T  5317977 tttaacctccaccgaaaatttggatgagttgaaggcacaacttaacagataatttgtccatcttggcgaaaatcaaagaatatctcatgtatttgtacaa 5318076  T
Q  520 gtgtcatgcgtcaatcaagcggcggataaagattaagacagttggaagaccatgtgttttccacaacttatccatgatgatg 601  Q
    |||||||| |||||||   |||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  5318077 gtgtcatgtgtcaatctgacggcggataaagatgaagacagttggaagatcatgtattttccacaacttatccatgatgatg 5318158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 371 - 601
Target Start/End: Original strand, 54254112 - 54254342
Alignment:
Q  371 ttgaagctcatgtccgatactgcgccttcaagaagtagattaatgcttttttaacccacactgacaatttcgatgagttgaaggcacaacttagcaaata 470  Q
    ||||||||  ||||||||||| ||||||| ||| |  |||||| | ||||||||||| ||| ||| | ||  ||||||||||| ||||||||| ||||||    
T  54254112 ttgaagctattgtccgatactccgccttctagaggatgattaaggtttttttaacccccaccgacgagttgcatgagttgaagacacaacttaacaaata 54254211  T
Q  471 ctttgtacatcttggtgaaaatcaaagaacatctcatgtattcgtacaagtgtcatgcgtcaatcaagcggcggataaagattaagacagttggaagacc 570  Q
     ||| | |||||| ||||| |||||| ||||||||||||||| ||||| |||||||| || ||||  ||||||||||||||| ||||||||||||||||     
T  54254212 ttttatccatcttagtgaagatcaaataacatctcatgtatttgtacatgtgtcatgggtgaatctggcggcggataaagatgaagacagttggaagact 54254311  T
Q  571 atgtgttttccacaacttatccatgatgatg 601  Q
    || | |||| || || |||||||||||||||    
T  54254312 atttatttttcaaaagttatccatgatgatg 54254342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 603 - 732
Target Start/End: Original strand, 5318252 - 5318374
Alignment:
Q  603 aatatgttcaaatttgtgctcgtaatgatgccttttaatgaaattcaaacttttgaggattgtgtattcaacaacgaatttgtgtaatttggattcatta 702  Q
    ||||||||| ||||||||| | ||||| ||| |||||||||||||||||||||||       |||||| ||| ||| ||||||||||| |||||| ||||    
T  5318252 aatatgttcgaatttgtgcccataatgttgcattttaatgaaattcaaacttttg-------tgtatttaacgacggatttgtgtaatatggattgatta 5318344  T
Q  703 tgtgtgattatgttatgatgagtatgatga 732  Q
    ||||||||||||||||||||| ||| ||||    
T  5318345 tgtgtgattatgttatgatgaatattatga 5318374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 659 - 727
Target Start/End: Original strand, 21178635 - 21178703
Alignment:
Q  659 ggattgtgtattcaacaacgaatttgtgtaatttggattcattatgtgtgattatgttatgatgagtat 727  Q
    |||||||||||| |||||||||||||||||||||||||| ||||| | |||||||||||||||||||||    
T  21178635 ggattgtgtatttaacaacgaatttgtgtaatttggattgattatatatgattatgttatgatgagtat 21178703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 418 - 510
Target Start/End: Original strand, 41784629 - 41784721
Alignment:
Q  418 tttttaacccacactgacaatttcgatgagttgaaggcacaacttagcaaatactttgtacatcttggtgaaaatcaaagaacatctcatgta 510  Q
    |||||||||| ||| ||||| || || ||||||||||||||||| | ||||||||||||  || |||||||||||||||||||||||||||||    
T  41784629 tttttaacccccaccgacaagttggacgagttgaaggcacaactcaacaaatactttgtcgatattggtgaaaatcaaagaacatctcatgta 41784721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 433 - 512
Target Start/End: Original strand, 21178323 - 21178402
Alignment:
Q  433 gacaatttcgatgagttgaaggcacaacttagcaaatactttgtacatcttggtgaaaatcaaagaacatctcatgtatt 512  Q
    ||||| || |||||||| ||||||||||||| || ||| ||||| |||||||||||||||||||||||||||||||||||    
T  21178323 gacaagttggatgagttaaaggcacaacttaacagatattttgtccatcttggtgaaaatcaaagaacatctcatgtatt 21178402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 600 - 727
Target Start/End: Original strand, 18777822 - 18777951
Alignment:
Q  600 tgtaatatgttcaaatttgtgctcgtaatgatgccttttaatgaaatt----caaacttttgaggattgtgtattcaacaacgaatttgtgtaatttgga 695  Q
    |||||||||||| ||| |||| | |||||| ||| |||||||||| ||    ||||  |||| |||| | ||||| ||| ||||||||||||||||| ||    
T  18777822 tgtaatatgttcgaatatgtgtttgtaatgttgcattttaatgaatttatgtcaaa--tttgtggatcgggtatttaacgacgaatttgtgtaatttaga 18777919  T
Q  696 ttcattatgtgtgattatgttatgatgagtat 727  Q
    || |||||||||||||||||||||||||||||    
T  18777920 ttgattatgtgtgattatgttatgatgagtat 18777951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 160 - 246
Target Start/End: Complemental strand, 24902893 - 24902807
Alignment:
Q  160 ggatgtaaaagttgatgggaaagaagtgtagaaaatgaaggagatgaagacaagtgacgtcgttgaaaacatcatgagagcttggga 246  Q
    |||||||||||||||||||| ||||||| | ||| |||||||  |||| ||||||||||| ||| | ||||||||||||| ||||||    
T  24902893 ggatgtaaaagttgatgggagagaagtgaaaaaagtgaaggatgtgaaaacaagtgacgtagttaacaacatcatgagagtttggga 24902807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 634 - 732
Target Start/End: Original strand, 54254465 - 54254563
Alignment:
Q  634 cttttaatgaaattcaaacttttgaggattgtgtattcaacaacgaatttgtgtaatttggattcattatgtgtgattatgttatgatgagtatgatga 732  Q
    ||||||||||||||||| |||||| | |||||||||  ||  |||||||||||||||||||||  |||| | ||||||| |||||||||| ||| ||||    
T  54254465 cttttaatgaaattcaatcttttgtgaattgtgtatgtaatgacgaatttgtgtaatttggatcaattaggagtgattacgttatgatgaatattatga 54254563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 359 - 521
Target Start/End: Complemental strand, 25659084 - 25658922
Alignment:
Q  359 aagatgcagaagttgaagctcatgtccgatactgcgccttcaagaagtagattaatgcttttttaacccacactgacaatttcgatgagttgaaggcaca 458  Q
    |||||||| || ||||| |||||||  |||| | ||| |||||||||  |||||| | ||||||||| |  || ||||   | |||||||||||| ||||    
T  25659084 aagatgcataaattgaaactcatgtatgatattccgctttcaagaagacgattaaagtttttttaactctaaccgacataatggatgagttgaagacaca 25658985  T
Q  459 acttagcaaatactttgtacatcttggtgaaaatcaaagaacatctcatgtattcgtacaagt 521  Q
    ||||| |||||| ||||   |||||||||||||||| |  |||||| ||||||| ||||||||    
T  25658984 acttaacaaatattttgcctatcttggtgaaaatcatactacatcttatgtatttgtacaagt 25658922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 442 - 518
Target Start/End: Original strand, 43609657 - 43609733
Alignment:
Q  442 gatgagttgaaggcacaacttagcaaatactttgtacatcttggtgaaaatcaaagaacatctcatgtattcgtaca 518  Q
    |||||||||||| |||||| || ||||||||||||  |||||||||||||||| |  | |||||||||||| |||||    
T  43609657 gatgagttgaagacacaacataacaaatactttgtgtatcttggtgaaaatcatactagatctcatgtatttgtaca 43609733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 440 - 492
Target Start/End: Original strand, 47534343 - 47534395
Alignment:
Q  440 tcgatgagttgaaggcacaacttagcaaatactttgtacatcttggtgaaaat 492  Q
    |||||||||||||| ||||||||| ||||||||||||  ||||||||||||||    
T  47534343 tcgatgagttgaagacacaacttaacaaatactttgtgtatcttggtgaaaat 47534395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 18773215 - 18773281
Alignment:
Q  13 aatattctaacggatttgaaaga-aaaaacaaagaaagtgtaacgaatataaaacaagtgtacaatg 78  Q
    |||||||||| ||||||||| || ||||||||||||||||| | |||||| ||||||||||| ||||    
T  18773215 aatattctaatggatttgaaggagaaaaacaaagaaagtgtgatgaatatcaaacaagtgtagaatg 18773281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 6e-39; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 367 - 601
Target Start/End: Complemental strand, 51410221 - 51409987
Alignment:
Q  367 gaagttgaagctcatgtccgatactgcgccttcaagaagtagattaatgcttttttaacccacactgacaatttcgatgagttgaaggcacaacttagca 466  Q
    |||||||||||||||||| ||||||     ||||||| |  |||| | | |||||||||| ||||||||||||| ||| ||||||||| |||||||| ||    
T  51410221 gaagttgaagctcatgtctgatactcttttttcaagaggacgattgaagtttttttaacctacactgacaatttggataagttgaaggtacaacttaaca 51410122  T
Q  467 aatactttgtacatcttggtgaaaatcaaagaacatctcatgtattcgtacaagtgtcatgcgtcaatcaagcggcggataaagattaagacagttggaa 566  Q
    |||| ||| | ||||||||| || ||||||||||||||||| |||| ||||  ||||||||| ||||||  | ||||||||||||| |||| ||||||||    
T  51410121 aatagtttatccatcttggtaaatatcaaagaacatctcatctatttgtacgggtgtcatgcatcaatctcgtggcggataaagatgaagagagttggaa 51410022  T
Q  567 gaccatgtgttttccacaacttatccatgatgatg 601  Q
    |||| | | |||| || || |||||||||||||||    
T  51410021 gaccgtttatttttcaaaagttatccatgatgatg 51409987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 331 - 528
Target Start/End: Complemental strand, 30540660 - 30540459
Alignment:
Q  331 ccataaacttttgtgaagtgaaacat---taaagatgcagaagttgaagctcatgtccgatactgcgccttcaagaagtagattaatgctttttt-aacc 426  Q
    |||||||  |||||||||||||||||   | |||||||| ||||| ||||||||||| |||||| ||||||||||| |  |||||| | |||||| |||     
T  30540660 ccataaaactttgtgaagtgaaacatgtgtgaagatgcacaagttaaagctcatgtcagatacttcgccttcaagaggacgattaaggttttttttaact 30540561  T
Q  427 cacactgacaatttcgatgagttgaaggcacaacttagcaaatactttgtacatcttggtgaaaatcaaagaacatctcatgtattcgtacaagtgtcat 526  Q
    | ||  ||||| || |||||||||||| ||||||||| |||||||||||| ||||| ||||||||||||| ||||| ||||||||| ||||| |||||||    
T  30540560 ctcatcgacaaattggatgagttgaagacacaacttaacaaatactttgtccatctcggtgaaaatcaaacaacatttcatgtatttgtacaggtgtcat 30540461  T
Q  527 gc 528  Q
    ||    
T  30540460 gc 30540459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 329 - 601
Target Start/End: Complemental strand, 49436305 - 49436023
Alignment:
Q  329 ttccataaacttttgtgaagtgaaacat---taaagatgcagaagtt------gaagctcatgtccgatactgcgccttcaagaagtagattaatgcttt 419  Q
    ||||| ||||||||||||||||||||||   |||||||||| |||||      ||||||||||| |||||||  |||||||||| |   ||||| | |||    
T  49436305 ttccaaaaacttttgtgaagtgaaacatgtctaaagatgcacaagttaaagttgaagctcatgttcgatactctgccttcaagaggacaattaaggtttt 49436206  T
Q  420 ttt-aacccacactgacaatttcgatgagttgaaggcacaacttagcaaatactttgtacatcttggtgaaaatcaaagaacatctcatgtattcgtaca 518  Q
    ||| ||||| ||  || || || ||| |||||||||||||||||| || ||| |||||  |||||||| ||||||||||||||||||||||||| ||| |    
T  49436205 ttttaacccccatcgataagttggataagttgaaggcacaacttaacatatattttgtcaatcttggtaaaaatcaaagaacatctcatgtatttgtata 49436106  T
Q  519 agtgtcatgcgtcaatcaagcggcggataaagattaagacagttggaagaccatgtgttttccacaacttatccatgatgatg 601  Q
     ||||||||||| ||||   || | ||||||||| ||||||||||||| ||| | | ||||| | || |||||||||||||||    
T  49436105 ggtgtcatgcgtgaatccgacgacagataaagatgaagacagttggaataccgtttattttctaaaagttatccatgatgatg 49436023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 418 - 530
Target Start/End: Original strand, 30531081 - 30531193
Alignment:
Q  418 tttttaacccacactgacaatttcgatgagttgaaggcacaacttagcaaatactttgtacatcttggtgaaaatcaaagaacatctcatgtattcgtac 517  Q
    |||||||| | ||| ||||| || |||||||||||||||||||||| ||| || ||| | ||| ||| ||||||||||||||||||||||||| | ||||    
T  30531081 tttttaactcccaccgacaagttggatgagttgaaggcacaacttaacaactattttatccatattgatgaaaatcaaagaacatctcatgtaatagtac 30531180  T
Q  518 aagtgtcatgcgt 530  Q
    ||||| |||||||    
T  30531181 aagtgccatgcgt 30531193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 654 - 727
Target Start/End: Original strand, 9193993 - 9194066
Alignment:
Q  654 tttgaggattgtgtattcaacaacgaatttgtgtaatttggattcattatgtgtgattatgttatgatgagtat 727  Q
    |||| |||||||||||| ||| ||||||||||||||||| |||  |||||||||||||||||||||||||||||    
T  9193993 tttgtggattgtgtatttaacgacgaatttgtgtaatttagatcgattatgtgtgattatgttatgatgagtat 9194066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 371 - 512
Target Start/End: Original strand, 21543905 - 21544046
Alignment:
Q  371 ttgaagctcatgtccgatactgcgccttcaagaagtagattaatgcttttttaacccacactgacaatttcgatgagttgaaggcacaacttagcaaata 470  Q
    ||||||||| |||| |||||| ||| |||||||||  |||||| | ||||||||| |  || ||||   | |||||||||||| ||||||||| ||||||    
T  21543905 ttgaagctcgtgtctgatactccgctttcaagaagacgattaaggtttttttaactctgaccgacatgatggatgagttgaagacacaacttaacaaata 21544004  T
Q  471 ctttgtacatcttggtgaaaatcaaagaacatctcatgtatt 512  Q
    ||||||  ||||||| | ||||||||  |||||| |||||||    
T  21544005 ctttgtctatcttggcgtaaatcaaactacatcttatgtatt 21544046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 442 - 530
Target Start/End: Complemental strand, 7470836 - 7470748
Alignment:
Q  442 gatgagttgaaggcacaacttagcaaatactttgtacatcttggtgaaaatcaaagaacatctcatgtattcgtacaagtgtcatgcgt 530  Q
    ||||||||||||  |||||||| |||||||||| | ||||||||||||||| |||  |||||| | ||||| |||||||| ||||||||    
T  7470836 gatgagttgaagatacaacttaacaaatactttttccatcttggtgaaaattaaattacatcttaggtatttgtacaagtttcatgcgt 7470748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 634 - 732
Target Start/End: Complemental strand, 23953445 - 23953347
Alignment:
Q  634 cttttaatgaaattcaaacttttgaggattgtgtattcaacaacgaatttgtgtaatttggattcattatgtgtgattatgttatgatgagtatgatga 732  Q
    |||||||||||||| || |||||| |||||||||||  ||   ||||||||||||||||||||  |||||| || ||||  ||||||||||||| ||||    
T  23953445 cttttaatgaaattaaatcttttgtggattgtgtatgtaatttcgaatttgtgtaatttggatctattatgagtaattacattatgatgagtattatga 23953347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 422 - 510
Target Start/End: Original strand, 27934058 - 27934146
Alignment:
Q  422 taacccacactgacaatttcgatgagttgaaggcacaacttagcaaatactttgtacatcttggtgaaaatcaaagaacatctcatgta 510  Q
    |||||| ||| ||||| ||||| ||||||||||||||||||  |  ||||||| | ||| |||||| |||||||||||||||| |||||    
T  27934058 taaccctcaccgacaagttcgacgagttgaaggcacaacttgacggatactttatccatgttggtgcaaatcaaagaacatctgatgta 27934146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 34085667 - 34085627
Alignment:
Q  12 gaatattctaacggatttgaaagaaaaaacaaagaaagtgt 52  Q
    ||||||||| ||||||||||| |||||||||||||||||||    
T  34085667 gaatattctcacggatttgaaggaaaaaacaaagaaagtgt 34085627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 445 - 497
Target Start/End: Complemental strand, 41731077 - 41731025
Alignment:
Q  445 gagttgaaggcacaacttagcaaatactttgtacatcttggtgaaaatcaaag 497  Q
    ||||||||| |||| |||| |||||||||||| |||||||||| |||||||||    
T  41731077 gagttgaagacacagcttaacaaatactttgttcatcttggtggaaatcaaag 41731025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 443 - 530
Target Start/End: Complemental strand, 7487298 - 7487211
Alignment:
Q  443 atgagttgaaggcacaacttagcaaatactttgtacatcttggtgaaaatcaaagaacatctcatgtattcgtacaagtgtcatgcgt 530  Q
    |||||||||||  |||||||| |||||||||||| |||||| | |||||| ||   |||||||| ||||| |||||||| | ||||||    
T  7487298 atgagttgaagatacaacttaacaaatactttgtccatctttgagaaaattaacttacatctcaggtatttgtacaagttttatgcgt 7487211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 654 - 723
Target Start/End: Original strand, 9193821 - 9193890
Alignment:
Q  654 tttgaggattgtgtattcaacaacgaatttgtgtaatttggattcattatgtgtgattatgttatgatga 723  Q
    |||| ||||||| | || ||| |||||||||||||||||| ||   ||||||||||||||||||| ||||    
T  9193821 tttgtggattgtttgtttaacgacgaatttgtgtaatttgaatcggttatgtgtgattatgttattatga 9193890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 6e-36; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 107 - 308
Target Start/End: Original strand, 10363650 - 10363851
Alignment:
Q  107 aagaatgtaagagctaagtgcaccacgaattgcagagtcaaactaaatccaaaggatgtaaaagttgatgggaaagaagtgtagaaaatgaaggagatga 206  Q
    ||||||||||||| ||| |||| || | ||| ||||||||| | ||| || ||||||||||||||| |||||||||||||| || |||  |||||| |||    
T  10363650 aagaatgtaagagttaactgcatcatggattacagagtcaacccaaagccgaaggatgtaaaagtttatgggaaagaagtgaaggaaacaaaggaggtga 10363749  T
Q  207 agacaagtgacgtcgttgaaaacatcatgagagcttgggaagatatggttgaatctcctacaaaggattaaagtataagtgcagtaacgcgattttgaga 306  Q
    || ||| |||||| ||||  ||||| |||||||||||||||||| |||||||||||| ||||||||||| |  || |||||| ||||| |||||| ||||    
T  10363750 aggcaattgacgtagttggcaacattatgagagcttgggaagatgtggttgaatctcttacaaaggattcatatacaagtgcggtaacacgatttcgaga 10363849  T
Q  307 tg 308  Q
    ||    
T  10363850 tg 10363851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 329 - 601
Target Start/End: Complemental strand, 27675732 - 27675458
Alignment:
Q  329 ttccataaacttttgtgaagtgaaacat---taaagatgcagaagttgaagctcatgtccgatactgcgccttcaagaagtagattaatgcttttttaac 425  Q
    ||||||||| ||||||||||||||||||   | |||||||| |||||||||||||||||||||||| | ||||||| | |   ||||| |   |||||||    
T  27675732 ttccataaaattttgtgaagtgaaacatgtttgaagatgcacaagttgaagctcatgtccgatactccaccttcaaaaggacaattaaggtacttttaac 27675633  T
Q  426 ccacactgacaatttcgatgagttgaaggcacaacttagcaaatactttgtacatcttggtgaaaatcaaagaacatctcatgtattcgtacaagtgtca 525  Q
    || ||  ||||| || ||| |||||||| ||||||||| |||||||||| | ||||||||||||||||||| ||| | ||||||||| |||||  || ||    
T  27675632 cctcaacgacaagttggataagttgaagacacaacttaacaaatactttctccatcttggtgaaaatcaaacaacgtttcatgtatttgtacagatgcca 27675533  T
Q  526 tgcgtcaatcaagcggcggataaagattaagacagttggaagaccatgtgttttccacaacttatccatgatgatg 601  Q
    |||||  ||| || | | ||||||||| ||||||  ||||||| ||| | |||||||||  |||| ||||||||||    
T  27675532 tgcgtagatctagggacagataaagatgaagacacgtggaaga-catttattttccacaggttattcatgatgatg 27675458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 371 - 530
Target Start/End: Complemental strand, 6662415 - 6662256
Alignment:
Q  371 ttgaagctcatgtccgatactgcgccttcaagaagtagattaatgcttttttaacccacactgacaatttcgatgagttgaaggcacaacttagcaaata 470  Q
    ||||||||||||||| ||| | | ||||||||| |  |||||| | ||||||||||||  | ||||| || |||||||||||||  ||||||| ||||||    
T  6662415 ttgaagctcatgtccaatattacaccttcaagaggacgattaaggtttttttaacccatgcagacaagttggatgagttgaaggggcaacttaacaaata 6662316  T
Q  471 ctttgtacatcttggtgaaaatcaaagaacatctcatgtattcgtacaagtgtcatgcgt 530  Q
    |||||| ||||||||||||||||| |  |||||||||||||| |||||||| ||||||||    
T  6662315 ctttgtccatcttggtgaaaatcatactacatctcatgtatttgtacaagtatcatgcgt 6662256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 371 - 530
Target Start/End: Complemental strand, 6742817 - 6742658
Alignment:
Q  371 ttgaagctcatgtccgatactgcgccttcaagaagtagattaatgcttttttaacccacactgacaatttcgatgagttgaaggcacaacttagcaaata 470  Q
    ||||||||||||||| ||| | | ||||||||| |  |||||| | ||||||||||||  | ||||| || |||||||||||||  ||||||| ||||||    
T  6742817 ttgaagctcatgtccaatattacaccttcaagaggacgattaaggtttttttaacccatgcagacaagttggatgagttgaaggggcaacttaacaaata 6742718  T
Q  471 ctttgtacatcttggtgaaaatcaaagaacatctcatgtattcgtacaagtgtcatgcgt 530  Q
    |||||| ||||||||||||||||| |  |||||||||||||| |||||||| ||||||||    
T  6742717 ctttgtccatcttggtgaaaatcatactacatctcatgtatttgtacaagtatcatgcgt 6742658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 158 - 312
Target Start/End: Complemental strand, 21401476 - 21401322
Alignment:
Q  158 aaggatgtaaaagttgatgggaaagaagtgtagaaaatgaaggagatgaagacaagtgacgtcgttgaaaacatcatgagagcttgggaagatatggttg 257  Q
    |||||||||||||||||||||||||||||| || || |||||||| |||||  ||||||||| ||  | ||||||||||||||||| ||  || ||||||    
T  21401476 aaggatgtaaaagttgatgggaaagaagtgaaggaagtgaaggaggtgaaggaaagtgacgtagtgaacaacatcatgagagcttgtgataatgtggttg 21401377  T
Q  258 aatctcctacaaaggattaaagtataagtgcagtaacgcgattttgagatgtatg 312  Q
    |||||||||||||||||| |  |  |||||| |||| |||||| |||||||||||    
T  21401376 aatctcctacaaaggattcatatgcaagtgcggtaatgcgattctgagatgtatg 21401322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 158 - 312
Target Start/End: Complemental strand, 21795969 - 21795815
Alignment:
Q  158 aaggatgtaaaagttgatgggaaagaagtgtagaaaatgaaggagatgaagacaagtgacgtcgttgaaaacatcatgagagcttgggaagatatggttg 257  Q
    |||||||||||||||||||||||||||||| || || |||||||| |||||  ||||||||| ||  | ||||||||||||||||| ||  || ||||||    
T  21795969 aaggatgtaaaagttgatgggaaagaagtgaaggaagtgaaggaggtgaaggaaagtgacgtagtgaacaacatcatgagagcttgtgataatgtggttg 21795870  T
Q  258 aatctcctacaaaggattaaagtataagtgcagtaacgcgattttgagatgtatg 312  Q
    |||||||||||||||||| |  |  |||||| |||| |||||| |||||||||||    
T  21795869 aatctcctacaaaggattcatatgcaagtgcggtaatgcgattctgagatgtatg 21795815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 418 - 534
Target Start/End: Original strand, 22208811 - 22208927
Alignment:
Q  418 tttttaacccacactgacaatttcgatgagttgaaggcacaacttagcaaatactttgtacatcttggtgaaaatcaaagaacatctcatgtattcgtac 517  Q
    |||||||||| |||  |||| || ||| |||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||| || ||||    
T  22208811 tttttaacccccaccaacaagttggataagttgaaggcacaacttaacaaatactttgtccatcttagtgaaaatcaaagaacatctcatgtgtttgtac 22208910  T
Q  518 aagtgtcatgcgtcaat 534  Q
    | |||||||| ||||||    
T  22208911 atgtgtcatgtgtcaat 22208927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 600 - 732
Target Start/End: Complemental strand, 44015544 - 44015412
Alignment:
Q  600 tgtaatatgttcaaatttgtgctcgtaatgatgccttttaatgaaattcaaacttttgaggattgtgtattcaacaacgaatttgtgtaatttggattca 699  Q
    |||||||||||| ||||||||   |||||| ||| || |||||||||||||||||||| |||||||||||| | |||| |||||||||| |||| ||| |    
T  44015544 tgtaatatgttcgaatttgtgtctgtaatgttgcattgtaatgaaattcaaacttttgtggattgtgtatttagcaactaatttgtgtagtttgaattaa 44015445  T
Q  700 ttatgtgtgattatgttatgatgagtatgatga 732  Q
    |||||| ||||||| ||||||||||||| ||||    
T  44015444 ttatgtttgattatattatgatgagtattatga 44015412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 368 - 530
Target Start/End: Complemental strand, 6586736 - 6586576
Alignment:
Q  368 aagttgaagctcatgtccgatactgcgccttcaagaagtagattaatgcttttttaacccacactgacaatttcgatgagttgaaggcacaacttagcaa 467  Q
    |||||||||||||||||| ||| | | ||||||||| |  | |||| | ||||||||||||| | ||||| || |||||||||||||  ||||||| | |    
T  6586736 aagttgaagctcatgtccaatattacaccttcaagaggacggttaaggtttttttaacccacgcagacaagttggatgagttgaaggggcaacttaacga 6586637  T
Q  468 atactttgtacatcttggtgaaaatcaaagaacatctcatgtattcgtacaagtgtcatgcgt 530  Q
    |||||  || ||||||||||||||||| |  |||||||||||||| |||||||| ||||||||    
T  6586636 atact--gtccatcttggtgaaaatcatactacatctcatgtatttgtacaagtatcatgcgt 6586576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 367 - 527
Target Start/End: Original strand, 29671044 - 29671201
Alignment:
Q  367 gaagttgaagctcatgtccgatactgcgccttcaagaagtagattaatgcttttttaacccacactgacaatttcgatgagttgaaggcacaacttagca 466  Q
    ||||||||||||||||| |||||||  | | | ||||||   ||||| |  |||||| ||| ||||||||| || || ||||||| |||||||||||  |    
T  29671044 gaagttgaagctcatgttcgatactctgtcgtgaagaag---attaaggtctttttaccccccactgacaagttggacgagttgatggcacaacttaata 29671140  T
Q  467 aatactttgtacatcttggtgaaaatcaaagaacatctcatgtattcgtacaagtgtcatg 527  Q
     ||||||||| ||| ||||||||||||||||||||||||||||||| ||||| ||| ||||    
T  29671141 gatactttgtccatattggtgaaaatcaaagaacatctcatgtatttgtacaggtgccatg 29671201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 10363120 - 10363206
Alignment:
Q  14 atattctaacggatttgaaagaaaa-aacaaagaaagtgtaacgaatataaaacaagtgtacaatgcacatgctagatggcgaaagt 99  Q
    ||||||||||||||||||| ||||| |||||||||||||| |||||||| ||||||||||||||||||    |||||||||||||||    
T  10363120 atattctaacggatttgaaggaaaaaaacaaagaaagtgtgacgaatattaaacaagtgtacaatgcatggactagatggcgaaagt 10363206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 418 - 510
Target Start/End: Original strand, 30944650 - 30944742
Alignment:
Q  418 tttttaacccacactgacaatttcgatgagttgaaggcacaacttagcaaatactttgtacatcttggtgaaaatcaaagaacatctcatgta 510  Q
    |||||||||| ||  ||||| || || ||||||||||||||||| | ||||||||||||  || |||||||||||||||||||||||||||||    
T  30944650 tttttaacccccatcgacaagttggacgagttgaaggcacaactcaacaaatactttgtcgatattggtgaaaatcaaagaacatctcatgta 30944742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 18327824 - 18327767
Alignment:
Q  24 ggatttgaaagaaaaaacaaagaaagtgtaacgaatataaaacaagtgtacaatgcac 81  Q
    ||||||||| ||||||| ||||||||| ||||||||||||||||||||| ||||||||    
T  18327824 ggatttgaaggaaaaaataaagaaagtttaacgaatataaaacaagtgtgcaatgcac 18327767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 449 - 512
Target Start/End: Complemental strand, 4473024 - 4472961
Alignment:
Q  449 tgaaggcacaacttagcaaatactttgtacatcttggtgaaaatcaaagaacatctcatgtatt 512  Q
    |||||||||||||||||| ||||||||| ||  ||||||||||||||||||||| | |||||||    
T  4473024 tgaaggcacaacttagcagatactttgtccacattggtgaaaatcaaagaacattttatgtatt 4472961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 418 - 528
Target Start/End: Complemental strand, 24619364 - 24619254
Alignment:
Q  418 tttttaacccacactgacaatttcgatgagttgaaggcacaacttagcaaatactttgtacatcttggtgaaaatcaaagaacatctcatgtattcgtac 517  Q
    |||||||||| | ||||||| || ||  |||||||||||||| ||| |  ||||||| |  || ||||||||||||||||||||||||||||  | ||||    
T  24619364 tttttaacccccgctgacaagttggacaagttgaaggcacaagttaactgatactttatcgatattggtgaaaatcaaagaacatctcatgtcattgtac 24619265  T
Q  518 aagtgtcatgc 528  Q
    | |||||||||    
T  24619264 aggtgtcatgc 24619254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 202
Target Start/End: Complemental strand, 13867078 - 13866982
Alignment:
Q  106 gaagaatgtaagagctaagtgcaccacgaattgcagagtcaaactaaatccaaaggatgtaaaagttgatgggaaagaagtgtagaaaatgaaggag 202  Q
    ||||||||||| || |||||||| |||| |||| ||||||||| | || || ||||||| |||||||| || |||||||||| || ||| |||||||    
T  13867078 gaagaatgtaaaagttaagtgcatcacggattgtagagtcaaagtgaagcctaaggatgcaaaagttgttgagaaagaagtgaaggaaacgaaggag 13866982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 418 - 510
Target Start/End: Complemental strand, 15893276 - 15893184
Alignment:
Q  418 tttttaacccacactgacaatttcgatgagttgaaggcacaacttagcaaatactttgtacatcttggtgaaaatcaaagaacatctcatgta 510  Q
    |||||||||  ||| ||||| || || ||||||||||||||||||| |   |||||| | |||  ||||||||||||||||||||||||||||    
T  15893276 tttttaacctccaccgacaagttggacgagttgaaggcacaacttaacggctactttatccatagtggtgaaaatcaaagaacatctcatgta 15893184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 21402035 - 21401975
Alignment:
Q  35 aaaaaacaaagaaagtgtaacgaatataaaacaagtgtacaatgcacatgctagatggcga 95  Q
    |||||||||||||||| | |  ||||||||||||||||||||||||| ||| |||||||||    
T  21402035 aaaaaacaaagaaagtatgagaaatataaaacaagtgtacaatgcacgtgcaagatggcga 21401975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 21796528 - 21796468
Alignment:
Q  35 aaaaaacaaagaaagtgtaacgaatataaaacaagtgtacaatgcacatgctagatggcga 95  Q
    |||||||||||||||| | |  ||||||||||||||||||||||||| ||| |||||||||    
T  21796528 aaaaaacaaagaaagtatgagaaatataaaacaagtgtacaatgcacgtgcaagatggcga 21796468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 654 - 712
Target Start/End: Original strand, 29671398 - 29671456
Alignment:
Q  654 tttgaggattgtgtattcaacaacgaatttgtgtaatttggattcattatgtgtgatta 712  Q
    |||| |||||||||||| ||| |||||||||||||||||||||   |||||||||||||    
T  29671398 tttgtggattgtgtatttaacgacgaatttgtgtaatttggatcatttatgtgtgatta 29671456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 550 - 601
Target Start/End: Original strand, 29671216 - 29671267
Alignment:
Q  550 gattaagacagttggaagaccatgtgttttccacaacttatccatgatgatg 601  Q
    ||| |||| |||||||||||| ||| |||||||||| |||||||||||||||    
T  29671216 gataaagatagttggaagaccgtgtattttccacaagttatccatgatgatg 29671267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 2e-32; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 442 - 601
Target Start/End: Original strand, 8356566 - 8356725
Alignment:
Q  442 gatgagttgaaggcacaacttagcaaatactttgtacatcttggtgaaaatcaaagaacatctcatgtattcgtacaagtgtcatgcgtcaatcaagcgg 541  Q
    |||||||||||||||||||||| || ||| ||||| ||||||||||||||||||| ||||||||||||||| ||||| ||||||||||| |||     |     
T  8356566 gatgagttgaaggcacaacttaacagatattttgttcatcttggtgaaaatcaaataacatctcatgtatttgtacaggtgtcatgcgtgaatatgatga 8356665  T
Q  542 cggataaagattaagacagttggaagaccatgtgttttccacaacttatccatgatgatg 601  Q
    ||||||||||| ||||  ||||||||||| | | ||||||| || |||||||||||||||    
T  8356666 cggataaagatgaagatggttggaagaccgtttattttccaaaagttatccatgatgatg 8356725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 444 - 590
Target Start/End: Complemental strand, 7648326 - 7648180
Alignment:
Q  444 tgagttgaaggcacaacttagcaaatactttgtacatcttggtgaaaatcaaagaacatctcatgtattcgtacaagtgtcatgcgtcaatcaagcggcg 543  Q
    ||||||||||||||| |||| |||||| ||||| ||| ||||||||||| ||| ||||||||||||||| ||||||||  |||| || || |    || |    
T  7648326 tgagttgaaggcacagcttaacaaataatttgtccatattggtgaaaattaaataacatctcatgtatttgtacaagtaccatgtgtgaacctgagggag 7648227  T
Q  544 gataaagattaagacagttggaagaccatgtgttttccacaacttat 590  Q
    ||||||||| || |||||||||||||||||| |||||||||| ||||    
T  7648226 gataaagatgaaaacagttggaagaccatgtattttccacaagttat 7648180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 329 - 518
Target Start/End: Complemental strand, 2289329 - 2289131
Alignment:
Q  329 ttccataaacttttgtgaagtgaaacat---taaagatgca------gaagttgaagctcatgtccgatactgcgccttcaagaagtagattaatgcttt 419  Q
    |||| |||||||||||||||||||||||   | ||||||||      |||||||||| ||||||| | |||| | |||||||||    |||||| | |||    
T  2289329 ttccttaaacttttgtgaagtgaaacatatctgaagatgcacaagttgaagttgaagatcatgtctggtactccaccttcaagagaacgattaaggtttt 2289230  T
Q  420 tttaacccacactgacaatttcgatgagttgaaggcacaacttagcaaatactttgtacatcttggtgaaaatcaaagaacatctcatgtattcgtaca 518  Q
    |||||||| |  | |||| || ||||||||||||  |||||| |  | ||||||||| ||||||||||||||||||||| ||||||||||||| |||||    
T  2289229 tttaacccccgataacaaattggatgagttgaagatacaactaaagagatactttgtccatcttggtgaaaatcaaagatcatctcatgtatttgtaca 2289131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 442 - 518
Target Start/End: Original strand, 31198257 - 31198333
Alignment:
Q  442 gatgagttgaaggcacaacttagcaaatactttgtacatcttggtgaaaatcaaagaacatctcatgtattcgtaca 518  Q
    |||||||||||| ||||||||| |||||| |||||  |||||||||||||||| |  ||||||| |||||| |||||    
T  31198257 gatgagttgaagtcacaacttaacaaataatttgtttatcttggtgaaaatcatactacatctcgtgtatttgtaca 31198333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 634 - 732
Target Start/End: Complemental strand, 2286233 - 2286135
Alignment:
Q  634 cttttaatgaaattcaaacttttgaggattgtgtattcaacaacgaatttgtgtaatttggattcattatgtgtgattatgttatgatgagtatgatga 732  Q
    ||||||||||||||||| |||||| | |||||||||  ||  | |||||||||||||||| ||  ||||||   |||||||||||||| ||||| ||||    
T  2286233 cttttaatgaaattcaatcttttgtgaattgtgtatgtaatgaagaatttgtgtaatttgaatcaattatgaaggattatgttatgataagtattatga 2286135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 654 - 712
Target Start/End: Complemental strand, 7648019 - 7647961
Alignment:
Q  654 tttgaggattgtgtattcaacaacgaatttgtgtaatttggattcattatgtgtgatta 712  Q
    |||| |||||||||||| ||| |||||||||||||||||| || | |||||||||||||    
T  7648019 tttgtggattgtgtatttaacgacgaatttgtgtaatttgtatcctttatgtgtgatta 7647961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 678 - 727
Target Start/End: Original strand, 8356901 - 8356950
Alignment:
Q  678 gaatttgtgtaatttggattcattatgtgtgattatgttatgatgagtat 727  Q
    |||||| |||||||| |||| |||||| ||||||||||||||||||||||    
T  8356901 gaatttttgtaattttgattaattatgagtgattatgttatgatgagtat 8356950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 442 - 518
Target Start/End: Original strand, 31177645 - 31177721
Alignment:
Q  442 gatgagttgaaggcacaacttagcaaatactttgtacatcttggtgaaaatcaaagaacatctcatgtattcgtaca 518  Q
    |||||||||||| |||||| || |||||| |||||  |||||||||||||||| |  ||||||| |||||| |||||    
T  31177645 gatgagttgaagtcacaacctaacaaataatttgtttatcttggtgaaaatcatactacatctcgtgtatttgtaca 31177721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 31519450 - 31519410
Alignment:
Q  12 gaatattctaacggatttgaaagaaaaaacaaagaaagtgt 52  Q
    ||||||||| ||||||||||| |||||||||||||||||||    
T  31519450 gaatattctcacggatttgaaggaaaaaacaaagaaagtgt 31519410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 329 - 405
Target Start/End: Complemental strand, 7648447 - 7648368
Alignment:
Q  329 ttccataaacttttgtgaagtgaaacat---taaagatgcagaagttgaagctcatgtccgatactgcgccttcaagaag 405  Q
    |||||| || ||||||||||||||||||   | |||||||| ||||||||||||||||  |||||| |||| | ||||||    
T  7648447 ttccattaaattttgtgaagtgaaacatgtttgaagatgcataagttgaagctcatgtatgatactccgccatgaagaag 7648368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1190 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold1190
Description:

Target: scaffold1190; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 371 - 530
Target Start/End: Original strand, 2043 - 2202
Alignment:
Q  371 ttgaagctcatgtccgatactgcgccttcaagaagtagattaatgcttttttaacccacactgacaatttcgatgagttgaaggcacaacttagcaaata 470  Q
    ||||||||||||||| ||| | | ||||||||| |  |||||| | ||||||||||||| | ||||| || |||||||||||||  ||||||| | ||||    
T  2043 ttgaagctcatgtccaatattacaccttcaagaggacgattaaggtttttttaacccacgcagacaagttggatgagttgaaggggcaacttaacgaata 2142  T
Q  471 ctttgtacatcttggtgaaaatcaaagaacatctcatgtattcgtacaagtgtcatgcgt 530  Q
    |||||| ||||||| ||||||||| |  |||||||||||||| |||||||| ||||||||    
T  2143 ctttgtccatcttgatgaaaatcatactacatctcatgtatttgtacaagtatcatgcgt 2202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 329 - 535
Target Start/End: Original strand, 19506973 - 19507189
Alignment:
Q  329 ttccataaacttttgtgaagtgaaacat---taaagatgca------gaagttgaagctcatgtccgatactgcgccttcaag-aagtagattaatgctt 418  Q
    |||||||||||||| |||||||||||||   | ||||||||      |||||||||||||||||| |||||| |  ||| ||| ||||  ||||| | ||    
T  19506973 ttccataaacttttatgaagtgaaacatgtctgaagatgcataagttgaagttgaagctcatgtctgatacttcttctttaagcaagtc-attaaggttt 19507071  T
Q  419 ttttaacccacactgacaatttcgatgagttgaaggcacaacttagcaaatactttgtacatcttggt-gaaaatcaaagaacatctcatgtattcgtac 517  Q
    ||||||||| ||| ||||| ||  ||||||||||||||||||||| || ||| |||||  |||||||| |||||||||||||||||||||||||| |||     
T  19507072 ttttaacccccaccgacaagttgaatgagttgaaggcacaacttaacagatattttgtcaatcttggtggaaaatcaaagaacatctcatgtatttgtat 19507171  T
Q  518 aagtgtcatgcgtcaatc 535  Q
    | || |||||||| ||||    
T  19507172 aggtatcatgcgtgaatc 19507189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 41634487 - 41634430
Alignment:
Q  13 aatattctaacggatttgaaagaaaaaacaaagaaagtgtaacgaatataaaacaagt 70  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  41634487 aatattctaacggatttgaaggaaaaaacaaagaaagtgtgacgaatataaaacaagt 41634430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 634 - 732
Target Start/End: Original strand, 19507351 - 19507449
Alignment:
Q  634 cttttaatgaaattcaaacttttgaggattgtgtattcaacaacgaatttgtgtaatttggattcattatgtgtgattatgttatgatgagtatgatga 732  Q
    ||||||||||||||||| | |||| |||||||||||| ||  || ||||||||||||||  ||  |||||| |||| ||||||||||||||||| ||||    
T  19507351 cttttaatgaaattcaatcatttgtggattgtgtatttaatgacaaatttgtgtaatttaaatcaattatgagtgactatgttatgatgagtattatga 19507449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 106 - 192
Target Start/End: Original strand, 19989094 - 19989180
Alignment:
Q  106 gaagaatgtaagagctaagtgcaccacgaattgcagagtcaaactaaatccaaaggatgtaaaagttgatgggaaagaagtgtagaa 192  Q
    ||||||||||||||||||||||| ||   || |||||||||||   || || |||||||||||||||||||||||||||||| ||||    
T  19989094 gaagaatgtaagagctaagtgcatcatagatcgcagagtcaaagcgaagccgaaggatgtaaaagttgatgggaaagaagtgaagaa 19989180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 418 - 521
Target Start/End: Complemental strand, 41634377 - 41634275
Alignment:
Q  418 tttttaacccacactgacaatttcgatgagttgaaggcacaacttagcaaatactttgtacatcttggtgaaaatcaaagaacatctcatgtattcgtac 517  Q
    |||||||||| ||| || || || |||||||||||| ||||| |||  | ||||||| | ||||||||||||||| ||| ||||||||||||||| ||||    
T  41634377 tttttaacccccaccgataagttggatgagttgaagacacaatttaaaagatactttatccatcttggtgaaaat-aaaaaacatctcatgtatttgtac 41634279  T
Q  518 aagt 521  Q
    ||||    
T  41634278 aagt 41634275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 447 - 582
Target Start/End: Original strand, 36342256 - 36342391
Alignment:
Q  447 gttgaaggcacaacttagcaaatactttgtacatcttggtgaaaatcaaagaacatctcatgtattcgtacaagtgtcatgcgtcaatcaagcggcggat 546  Q
    ||||||| ||||||||| ||||||||| || ||| ||||| |||||||||||||||||  | |||| ||||| |||  ||| || || | |  || ||||    
T  36342256 gttgaagtcacaacttaacaaatacttcgtccatattggtaaaaatcaaagaacatcttgtatatttgtacatgtgctatgtgtgaacctaatggtggat 36342355  T
Q  547 aaagattaagacagttggaagaccatgtgttttcca 582  Q
    |||||| || | |||||||||||| ||| |||||||    
T  36342356 aaagatgaaaatagttggaagaccgtgtattttcca 36342391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 417 - 521
Target Start/End: Original strand, 31101119 - 31101223
Alignment:
Q  417 ttttttaacccacactgacaatttcgatgagttgaaggcacaacttagcaaatactttgtacatcttggtgaaaatcaaagaacatctcatgtattcgta 516  Q
    ||||||||||| | | ||||| || |||||||| ||| |||||||||  ||||||||||| |||||| |||||||| |||     ||||||||||| |||    
T  31101119 ttttttaacccccgccgacaagttggatgagtttaagacacaacttaataaatactttgtccatctttgtgaaaataaaattgtgtctcatgtatttgta 31101218  T
Q  517 caagt 521  Q
    |||||    
T  31101219 caagt 31101223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 676 - 713
Target Start/End: Original strand, 36342657 - 36342694
Alignment:
Q  676 acgaatttgtgtaatttggattcattatgtgtgattat 713  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  36342657 acgaatttgtgtaatttgaattgattatgtgtgattat 36342694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 600 - 732
Target Start/End: Complemental strand, 45730 - 45598
Alignment:
Q  600 tgtaatatgttcaaatttgtgctcgtaatgatgccttttaatgaaattcaaacttttgaggattgtgtattcaacaacgaatttgtgtaatttggattca 699  Q
    |||||||||||| ||||||||  | ||||  ||| ||| |||||||||| ||| |||| |||||||||||| ||  |||||||| ||||||| | ||  |    
T  45730 tgtaatatgttcgaatttgtgtccataatattgcatttgaatgaaattccaacatttgtggattgtgtatttaaagacgaatttatgtaattcgaatcaa 45631  T
Q  700 ttatgtgtgattatgttatgatgagtatgatga 732  Q
    ||||||||||||||||| |||||||||| ||||    
T  45630 ttatgtgtgattatgttctgatgagtattatga 45598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 418 - 502
Target Start/End: Complemental strand, 46003 - 45918
Alignment:
Q  418 tttttaacccacactgacaatttcgatgagttgaaggcacaacttagcaaatactttgtacatcttggtg-aaaatcaaagaacat 502  Q
    |||||||||| ||||||||| || |||||||||||||||||| ||| || ||||||||| || ||||||| |||||||||||||||    
T  46003 tttttaacccccactgacaagttggatgagttgaaggcacaatttaacagatactttgtccaacttggtgaaaaatcaaagaacat 45918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 371 - 507
Target Start/End: Complemental strand, 38810598 - 38810462
Alignment:
Q  371 ttgaagctcatgtccgatactgcgccttcaagaagtagattaatgcttttttaacccacactgacaatttcgatgagttgaaggcacaacttagcaaata 470  Q
    ||||||||||||||||||||  |||| | || ||| | ||||| |  |||||||||| ||| |||||  | || |||||||| |||||||||| || |||    
T  38810598 ttgaagctcatgtccgatacgtcgccgtgaaaaagaatattaaggtctttttaacccccaccgacaaggttgacgagttgaaagcacaacttaacatata 38810499  T
Q  471 ctttgtacatcttggtgaaaatcaaagaacatctcat 507  Q
    |||| | ||| ||||||||||||||||||||||||||    
T  38810498 ctttatccatattggtgaaaatcaaagaacatctcat 38810462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 444 - 512
Target Start/End: Original strand, 25140947 - 25141015
Alignment:
Q  444 tgagttgaaggcacaacttagcaaatactttgtacatcttggtgaaaatcaaagaacatctcatgtatt 512  Q
    |||||||||| ||||| ||| |||||| |||||  |||||||||||||||| |  ||||||||||||||    
T  25140947 tgagttgaagacacaaattaacaaatattttgtctatcttggtgaaaatcatactacatctcatgtatt 25141015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 442 - 494
Target Start/End: Original strand, 25233707 - 25233759
Alignment:
Q  442 gatgagttgaaggcacaacttagcaaatactttgtacatcttggtgaaaatca 494  Q
    ||||||||||||||||||||||  ||||||||||   ||||||||||||||||    
T  25233707 gatgagttgaaggcacaacttaataaatactttgagtatcttggtgaaaatca 25233759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 442 - 495
Target Start/End: Original strand, 46978692 - 46978745
Alignment:
Q  442 gatgagttgaaggcacaacttagcaaatactttgtacatcttggtgaaaatcaa 495  Q
    ||||| |||||||||||||||| ||  || |||| |||||||||||||||||||    
T  46978692 gatgatttgaaggcacaacttaacacttattttgaacatcttggtgaaaatcaa 46978745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 8e-17; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 445 - 510
Target Start/End: Complemental strand, 29249041 - 29248976
Alignment:
Q  445 gagttgaaggcacaacttagcaaatactttgtacatcttggtgaaaatcaaagaacatctcatgta 510  Q
    ||||||||||||||||| | ||||||||||||  || |||||||||||||||||||||||||||||    
T  29249041 gagttgaaggcacaactcaacaaatactttgtcgatattggtgaaaatcaaagaacatctcatgta 29248976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 2835657 - 2835703
Alignment:
Q  35 aaaaaacaaagaaagtgtaacgaatataaaacaagtgtacaatgcac 81  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||    
T  2835657 aaaaaacaaagaaagtgtgacgaatataaaacaagtgtacaatgcac 2835703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 442 - 518
Target Start/End: Complemental strand, 20904752 - 20904676
Alignment:
Q  442 gatgagttgaaggcacaacttagcaaatactttgtacatcttggtgaaaatcaaagaacatctcatgtattcgtaca 518  Q
    |||||||| ||| ||||||||| ||||||||||||  |||||| ||||||||| |  |||||||||||||| |||||    
T  20904752 gatgagttaaagacacaacttaacaaatactttgtctatcttgatgaaaatcatactacatctcatgtatttgtaca 20904676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 187
Target Start/End: Original strand, 2836171 - 2836253
Alignment:
Q  105 ggaagaatgtaagagctaagtgcaccacgaattgcagagtcaaactaaatccaaaggatgtaaaagttgatgggaaagaagtg 187  Q
    ||||||||||||||||||| |||| |||| ||||||||||||||    | || || ||| ||| |||||||||||||||||||    
T  2836171 ggaagaatgtaagagctaattgcatcacggattgcagagtcaaagcggagccgaaagatataacagttgatgggaaagaagtg 2836253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 187
Target Start/End: Complemental strand, 23558713 - 23558632
Alignment:
Q  106 gaagaatgtaagagctaagtgcaccacgaattgcagagtcaaactaaatccaaaggatgtaaaagttgatgggaaagaagtg 187  Q
    ||||||||||| || ||| ||||||||| |||| ||||| ||| | || |||||||||| |||||||| || ||||||||||    
T  23558713 gaagaatgtaaaagttaaatgcaccacggattgtagagttaaagtgaagccaaaggatgcaaaagttgttgagaaagaagtg 23558632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 677 - 732
Target Start/End: Complemental strand, 33202360 - 33202305
Alignment:
Q  677 cgaatttgtgtaatttggattcattatgtgtgattatgttatgatgagtatgatga 732  Q
    ||||||||||||||||||||  |||||| |||||||| |||||| |||||| ||||    
T  33202360 cgaatttgtgtaatttggatcaattatgagtgattatattatgacgagtattatga 33202305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 20905724 - 20905687
Alignment:
Q  233 atgagagcttgggaagatatggttgaatctcctacaaa 270  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  20905724 atgagagcatgggatgatatggttgaatctcctacaaa 20905687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 662 - 711
Target Start/End: Original strand, 26154189 - 26154238
Alignment:
Q  662 ttgtgtattcaacaacgaatttgtgtaatttggattcattatgtgtgatt 711  Q
    ||||||||| ||| |||||||||||||||||||||   ||||||||||||    
T  26154189 ttgtgtatttaacgacgaatttgtgtaatttggatcgtttatgtgtgatt 26154238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0156 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: scaffold0156
Description:

Target: scaffold0156; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 24113 - 24026
Alignment:
Q  12 gaatattctaacggatttgaaagaaaaaacaaagaaagtgtaacgaatataaaacaagtgtacaatgcacatgctagatggcgaaagt 99  Q
    ||||||| ||||  ||||||| ||||||||||||||||| | | || ||||||||||| |||||||||||    ||||||||||||||    
T  24113 gaatattataacatatttgaaggaaaaaacaaagaaagtttgaagattataaaacaagcgtacaatgcacggtttagatggcgaaagt 24026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0156; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 81
Target Start/End: Original strand, 18427 - 18497
Alignment:
Q  12 gaatattctaacggatttgaaagaaaa-aacaaagaaagtgtaacgaatataaaacaagtgtacaatgcac 81  Q
    ||||||| |||| |||||||| ||||| |||||||||||| | | |||||||||||| |||||||||||||    
T  18427 gaatattttaacagatttgaaggaaaaaaacaaagaaagtttgaagaatataaaacaggtgtacaatgcac 18497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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