View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18857_low_5 (Length: 616)
Name: NF18857_low_5
Description: NF18857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18857_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 563; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 7 - 597
Target Start/End: Complemental strand, 45561937 - 45561347
Alignment:
| Q |
7 |
tccaagaatataccgatcacttaggttcgatgtagcctccatgactttgttaagaaggtgagaagtacctccattatcagtgaaatggacttgcttctta |
106 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45561937 |
tccaataatataccgatcacttaggttcgatgtagcctccatgactttgttaagaaggtgagaagtacctccattatcagtgaaatggacttgcttctta |
45561838 |
T |
|
| Q |
107 |
gattttctgccataagaaaagaaataaactaatcccagaagaagcaaaacaacagatattgaggatcctagagctatcatcacaattgaaattttactga |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45561837 |
gattttctgccataagaaaagaaataaactaatcccagaagaagcaaaacaacagatattgaggatcctagagctatcatcacaattgaaattttactga |
45561738 |
T |
|
| Q |
207 |
ggcctttgtgattaactgttatgttatcacatggttttagatatccgattttggagcaaaccaagccattggagggtgaacaattgatacatagcccagg |
306 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
45561737 |
ggcctttgtgattaactgttttgttatcacatggttttagatatccgattttggagcaaaccaagccattggatggtgaacaactgatacatagcccagg |
45561638 |
T |
|
| Q |
307 |
attccccaaaaatgatgacagggaagaattgagcagcttcattagtatcttcggaacaggaccctgaaaagaattgtatgacatattgatttcaaccaat |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45561637 |
attccccaaaaatgatgacagggaagaattgagcagcttcattagtatcttcggaacaggaccctgaaaagaattgtatgacatattgatttcaaccaat |
45561538 |
T |
|
| Q |
407 |
gaagggaaatcatcaagaacctgtatgcttcctgtcaaattgttatgagatagatccagcaattgcaaagttttcagttttccgatttccacaggaatgt |
506 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
45561537 |
gaagggaagtcatcaagaacctgtatgcttcctgtcaaattgttctgagatagatccagcaattgcaaagttttcagttttccaatttccacaggaatgt |
45561438 |
T |
|
| Q |
507 |
cgcctatcagcccattagaacttagattcaaaccatagatcaaattctgcaatgccccaaccgatctaggaattctcccaccaaacatatt |
597 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45561437 |
cgcctatcagcccattagaacttagattcaaaccatagatcaaattctgcaatgccccaaccgatctaggaattctcccaccaaacatatt |
45561347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University