View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18857_low_9 (Length: 421)
Name: NF18857_low_9
Description: NF18857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18857_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 9e-80; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 252 - 406
Target Start/End: Complemental strand, 9879821 - 9879667
Alignment:
| Q |
252 |
atatacgttatttagcatgcaaaatcaatctacaacgtaaaactgattgaaaattgaaagcaagaaaataaagaaaacgtgattagtactctgacagcag |
351 |
Q |
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| T |
9879821 |
atatacgttatttagcatgcaaaatcaatctacaacataaaactgattgaaaattgaaagcaagaaaataaagaaaacgtgattagtactctgacagcag |
9879722 |
T |
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| Q |
352 |
ttgatgaaatccatccatgccacggttttaatgtaacttcatatgattcttcaac |
406 |
Q |
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| T |
9879721 |
ttgatgaaatccatccatgccacggttttaatgtaacttcatatgattcttcaac |
9879667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 9880213 - 9880103
Alignment:
| Q |
1 |
ttttctgcttaaccatgtcatggtcttcatcttcagtcttaaggagatcaatgaatgtcttactttctggaactaattttagggctacctgcaatgccaa |
100 |
Q |
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| T |
9880213 |
ttttctgcttaaccatgtcatggtcttcatcttcagtcttaaggagatctatgaatgtcttactttctggaactaattttagggctacctgcaatgccaa |
9880114 |
T |
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| Q |
101 |
ttatatttgtt |
111 |
Q |
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||||||||||| |
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| T |
9880113 |
ttatatttgtt |
9880103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 331 - 407
Target Start/End: Complemental strand, 9872829 - 9872753
Alignment:
| Q |
331 |
tgattagtactctgacagcagttgatgaaatccatccatgccacggttttaatgtaacttcatatgattcttcaact |
407 |
Q |
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| T |
9872829 |
tgattagtactctgacagcagttgatgaaatccatccatgccatggttttaatgttacttcataagattcttcaact |
9872753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 24 - 108
Target Start/End: Complemental strand, 9873085 - 9873001
Alignment:
| Q |
24 |
tcttcatcttcagtcttaaggagatcaatgaatgtcttactttctggaactaattttagggctacctgcaatgccaattatattt |
108 |
Q |
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| T |
9873085 |
tcttcatcttcagtcttaaggagatcaatgaatgtcttactttctggaactaatcttagagccacctgaaacgtcatttatattt |
9873001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 223 - 262
Target Start/End: Complemental strand, 9879875 - 9879836
Alignment:
| Q |
223 |
gacataatcaagaatatgtgattatcaagatatacgttat |
262 |
Q |
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| T |
9879875 |
gacataatcaagaatatgtgattatcaagatatacgttat |
9879836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 106 - 145
Target Start/End: Complemental strand, 9880059 - 9880020
Alignment:
| Q |
106 |
tttgtttgaagtaatgatcataatcctaatcccctcaccc |
145 |
Q |
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| T |
9880059 |
tttgtttgaagtaatgatcataatcctaatcccctcaccc |
9880020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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