View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18858_high_13 (Length: 311)

Name: NF18858_high_13
Description: NF18858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18858_high_13
NF18858_high_13
[»] chr2 (4 HSPs)
chr2 (103-298)||(35127557-35127750)
chr2 (103-279)||(35149560-35149737)
chr2 (1-33)||(25471656-25471688)
chr2 (1-37)||(30387312-30387348)
[»] chr8 (1 HSPs)
chr8 (1-96)||(12700691-12700786)
[»] scaffold0065 (1 HSPs)
scaffold0065 (1-98)||(66778-66875)
[»] chr5 (2 HSPs)
chr5 (1-97)||(32699218-32699314)
chr5 (1-98)||(43323253-43323348)
[»] chr4 (1 HSPs)
chr4 (1-103)||(56366418-56366518)
[»] chr7 (5 HSPs)
chr7 (1-98)||(37548319-37548414)
chr7 (1-96)||(36628938-36629033)
chr7 (1-103)||(10015276-10015376)
chr7 (1-42)||(5771280-5771321)
chr7 (66-98)||(30081987-30082019)
[»] chr3 (3 HSPs)
chr3 (1-98)||(33444015-33444110)
chr3 (1-98)||(9467006-9467101)
chr3 (1-37)||(29714206-29714242)
[»] chr6 (1 HSPs)
chr6 (1-103)||(4090315-4090417)
[»] scaffold0329 (1 HSPs)
scaffold0329 (214-256)||(16538-16580)


Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 103 - 298
Target Start/End: Original strand, 35127557 - 35127750
Alignment:
Q  103 cttaaggtgctacacctatgtactgacgaaaggaaaagtacgtttcgaaaagccttcaagagtgattgtgatttgcttatggtgttgaaagagtctttga 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35127557 cttaaggtgctacacctatgtactgacgaaaggaaaagtacgtttcgaaaagccttcaagagtgattgtgatttgcttatggtgttgaaagagtctttga 35127656  T
Q  203 ggattgttgcgcaatgtatgtttggaaagtttatgagttttcatgtcatgagtcacacatgtcatcatcatgatggtttggtttgtgttattgttg 298  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35127657 ggattgttgcgcaatgtatgtttggaaagtt--tgagttttcatgtcatgagtcacacatgtcatcatcatgatggtttggtttgtgttattgttg 35127750  T

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Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 103 - 279
Target Start/End: Original strand, 35149560 - 35149737
Alignment:
Q  103 cttaaggtgctacacctatgtactgacgaaaggaaaagtacgtttcgaaaagccttcaagagtgattgtgattt-gcttatggtgttgaaagagtctttg 201  Q
    ||||||| |||||||||||||| |||| |||||||||||| ||| |||||| || | ||||||||| ||| ||| | ||||||||||| | |||||||||    
T  35149560 cttaaggcgctacacctatgtattgacaaaaggaaaagtatgttacgaaaatcccttaagagtgatcgtgtttttgtttatggtgttggaggagtctttg 35149659  T
Q  202 aggattgttgcgcaatgtatgtttggaaagtttatgagttttcatgtcatgagtcacacatgtcatcatcatgatggt 279  Q
    | ||| ||||||||||| ||||||||||| | |||||||||||||| ||||||| || |||||||||||| |||||||    
T  35149660 aagatggttgcgcaatgaatgtttggaaaatgtatgagttttcatgccatgagtaacgcatgtcatcatcctgatggt 35149737  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 25471688 - 25471656
Alignment:
Q  1 aatgaagagctaataaaatcacaaaaaagagct 33  Q
    |||||||||||||||||||||||| ||||||||    
T  25471688 aatgaagagctaataaaatcacaacaaagagct 25471656  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 30387312 - 30387348
Alignment:
Q  1 aatgaagagctaataaaatcacaaaaaagagctaaaa 37  Q
    |||||||||||||||||||||||| || |||||||||    
T  30387312 aatgaagagctaataaaatcacaataatgagctaaaa 30387348  T

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Target: chr8 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 12700691 - 12700786
Alignment:
Q  1 aatgaagagctaataaaatcacaaaaaagagctaaaagaattatgtaaagggtccattttcactttatgcctaaggctcctaaaatgctaggaacg 96  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||   |||||||||||||||||||||||||||||||||    
T  12700691 aatgaagacctaataaaatcacaaaaaagagctaaaagaattatgtaaagggcccttttttcatttatgcctaaggctcctaaaatgctaggaacg 12700786  T

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Target: scaffold0065 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 66778 - 66875
Alignment:
Q  1 aatgaagagctaataaaatcacaaaaaagagctaaaagaattatgtaaagggtccattttcactttatgcctaaggctcctaaaatgctaggaacggc 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||| | | |||||||||||| ||||||||||||||||||||    
T  66778 aatgaagagctaataaaatcacaaaaaagagctaaaagaattatgtaaagggcacttttttattctatgcctaaggcccctaaaatgctaggaacggc 66875  T

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Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 32699218 - 32699314
Alignment:
Q  1 aatgaagagctaataaaatcacaaaaaagagctaaaagaattatgtaaagggtccattttcactttatgcctaaggctcctaaaatgctaggaacgg 97  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||  || |||||| | |||||||||||| |||||||| ||||||||||    
T  32699218 aatgaagagctaataaaatcacaaaaaagaactaaaagaattatgtaaaggaccctttttcattctatgcctaaggcccctaaaatactaggaacgg 32699314  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 43323348 - 43323253
Alignment:
Q  1 aatgaagagctaataaaatcacaaaaaagagctaaaagaattatgtaaagggtccattttcactttatgcctaaggctcctaaaatgctaggaacggc 98  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| | |||||| |||||| | ||| ||| |||| ||||||||||||||||||||    
T  43323348 aatgaagagctaataaaatcaca-aaaagagctaaaagaattatgt-aggggtcctttttcattctatacctcaggcccctaaaatgctaggaacggc 43323253  T

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Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 56366518 - 56366418
Alignment:
Q  1 aatgaagagctaataaaatcacaaaaaagagctaaaagaattatgtaaagggtccattttcactttatgcctaaggctcctaaaatgctaggaacggctc 100  Q
    |||||||||||||||||||||||||||| | |  ||||||||||||||||||||  |||||| | |||||||||||| |||||||||||||||||||| |    
T  56366518 aatgaagagctaataaaatcacaaaaaaaaac--aaagaattatgtaaagggtcatttttcattctatgcctaaggcccctaaaatgctaggaacggccc 56366421  T
Q  101 tgc 103  Q
    |||    
T  56366420 tgc 56366418  T

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Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 37548414 - 37548319
Alignment:
Q  1 aatgaagagctaataaaatcacaaaaaagagctaaaagaattatgtaaagggtccattttcactttatgcctaaggctcctaaaatgctaggaacggc 98  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||  ||| || |||||| | |||||||||||| ||||||||||||||||||||    
T  37548414 aatgaagagctaataaaatcacaaaaa-gagctaaaagaattatgtag-gggccctttttcattctatgcctaaggcccctaaaatgctaggaacggc 37548319  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 36628938 - 36629033
Alignment:
Q  1 aatgaagagctaataaaatcacaaaaaagagctaaaagaattatgtaaagggtccattttcactttatgcctaaggctcctaaaatgctaggaacg 96  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||| ||| || | |||| | ||| |||||||| ||||||||||||||||||    
T  36628938 aatgaagaactaataaaatcacaacaaagagctaaaagaattatgtaaggggcccttcttcattctatacctaaggcccctaaaatgctaggaacg 36629033  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 10015376 - 10015276
Alignment:
Q  1 aatgaagagctaataaaatcacaaaaaagagctaaaagaattatgtaaagggtccattttcactttatgcctaaggctcctaaaatgctaggaacggctc 100  Q
    ||||||||||||||||||||| |||||| |    ||||||||||||||||||||| |||||| | |||||||||||| ||||||||| |||||||||| |    
T  10015376 aatgaagagctaataaaatcataaaaaaaa--ataaagaattatgtaaagggtcctttttcattctatgcctaaggcccctaaaatgttaggaacggccc 10015279  T
Q  101 tgc 103  Q
    |||    
T  10015278 tgc 10015276  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 5771280 - 5771321
Alignment:
Q  1 aatgaagagctaataaaatcacaaaaaagagctaaaagaatt 42  Q
    |||||||||||||||||||||||| || ||||||||| ||||    
T  5771280 aatgaagagctaataaaatcacaacaatgagctaaaaaaatt 5771321  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 98
Target Start/End: Complemental strand, 30082019 - 30081987
Alignment:
Q  66 tatgcctaaggctcctaaaatgctaggaacggc 98  Q
    |||||||||||| ||||||||||||||||||||    
T  30082019 tatgcctaaggcccctaaaatgctaggaacggc 30081987  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 33444015 - 33444110
Alignment:
Q  1 aatgaagagctaataaaatcacaaaaaagagctaaaagaattatgtaaagggtccattttcactttatgcctaaggctcctaaaatgctaggaacggc 98  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||  |||||| |||||| | |||| ||||||| ||||||||||||||||||||    
T  33444015 aatgaagagctaataaaatcacaaaaa-gagctaaaagaattatgtag-gggtcctttttcattctatgtctaaggcccctaaaatgctaggaacggc 33444110  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 9467101 - 9467006
Alignment:
Q  1 aatgaagagctaataaaatcacaaaaaagagctaaaagaattatgtaaagggtccattttcactttatgcctaaggctcctaaaatgctaggaacggc 98  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| | ||| || |||||| | |||  ||||||| ||||||||||||||||||||    
T  9467101 aatgaagagctaataaaatcaca-aaaagagctaaaagaattatgt-aggggccctttttcattctatatctaaggcccctaaaatgctaggaacggc 9467006  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 29714206 - 29714242
Alignment:
Q  1 aatgaagagctaataaaatcacaaaaaagagctaaaa 37  Q
    |||||||||||||||||||||||| || |||||||||    
T  29714206 aatgaagagctaataaaatcacaacaatgagctaaaa 29714242  T

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Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 4090417 - 4090315
Alignment:
Q  1 aatgaagagctaataaaatcacaaaaaagagctaaaagaattatgtaaagggtccattttcactttatgcctaaggctcctaaaatgctaggaacggctc 100  Q
    ||||| || |||||||||| |||| |||||||||||| | |||||||| ||| || |||||| | |||||||||| | |||||||||||||||||||| |    
T  4090417 aatgatgatctaataaaattacaacaaagagctaaaaaatttatgtaaggggccctttttcattctatgcctaagacccctaaaatgctaggaacggccc 4090318  T
Q  101 tgc 103  Q
    |||    
T  4090317 tgc 4090315  T

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Target: scaffold0329 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 256
Target Start/End: Original strand, 16538 - 16580
Alignment:
Q  214 caatgtatgtttggaaagtttatgagttttcatgtcatgagtc 256  Q
    ||||| |||||||||| || |||||||||||||||||||||||    
T  16538 caatggatgtttggaatgtgtatgagttttcatgtcatgagtc 16580  T

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