View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18858_high_15 (Length: 259)

Name: NF18858_high_15
Description: NF18858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18858_high_15
NF18858_high_15
[»] chr3 (10 HSPs)
chr3 (188-247)||(6798951-6799010)
chr3 (30-104)||(6549823-6549897)
chr3 (31-109)||(6796596-6796674)
chr3 (202-247)||(8573240-8573285)
chr3 (29-224)||(6764002-6764197)
chr3 (60-109)||(6527109-6527158)
chr3 (60-109)||(6848690-6848739)
chr3 (39-106)||(9719512-9719579)
chr3 (202-247)||(6859785-6859830)
chr3 (207-247)||(6934162-6934202)
[»] chr7 (1 HSPs)
chr7 (137-226)||(6576295-6576383)


Alignment Details
Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 188 - 247
Target Start/End: Complemental strand, 6799010 - 6798951
Alignment:
Q  188 ttctcaaggcctaaaaaacatcattgtcttcggaagacatccttgttcagaaatacttct 247  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  6799010 ttctcaagtcctaaaaaacatcattgtcttcagaagacatccttgttcagaaatacttct 6798951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 6549897 - 6549823
Alignment:
Q  30 ctcatcattcctaaggcataaatatgggtagtgccttgcagaatggtcctgtgttacatctggaagcatataaaa 104  Q
    |||||||||||||| ||||||||  | |||||||||||||||||||| ||||||||||| ||| |||||||||||    
T  6549897 ctcatcattcctaatgcataaattggagtagtgccttgcagaatggttctgtgttacatttggcagcatataaaa 6549823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 109
Target Start/End: Complemental strand, 6796674 - 6796596
Alignment:
Q  31 tcatcattcctaaggcataaatatgggtagtgccttgcagaatggtcctgtgttacatctggaagcatataaaatgcag 109  Q
    ||||||||||||| ||||||||  | |||| |||||| |||||||| ||||||||||| ||| ||||||||||||||||    
T  6796674 tcatcattcctaatgcataaattggagtagcgccttggagaatggttctgtgttacatttggcagcatataaaatgcag 6796596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 8573285 - 8573240
Alignment:
Q  202 aaaacatcattgtcttcggaagacatccttgttcagaaatacttct 247  Q
    ||||||||||||||||| || |||||||||||||||||||||||||    
T  8573285 aaaacatcattgtcttcagacgacatccttgttcagaaatacttct 8573240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 224
Target Start/End: Original strand, 6764002 - 6764197
Alignment:
Q  29 actcatcattcctaaggcataaatatgggtagtgccttgcagaatggtcctgtgttacatctggaagcatataaaatgcagatatctgactttagtctat 128  Q
    ||||||||||||||| ||||||||  | |||||| |||| |||||||| |||| |||||| ||||||||||   ||| ||||||| | |||| ||| |||    
T  6764002 actcatcattcctaatgcataaattggagtagtgtcttgtagaatggttctgttttacatttggaagcataagtaattcagatatttaacttgagtatat 6764101  T
Q  129 ttgtctggtttcttctcatgatgacaatgttgcgaaaagcatggtcttctctatatttcttctcaaggcctaaaaaacatcattgtcttcggaaga 224  Q
    || || | ||  || || |||||  |||||||   ||||  |||||||||| | ||||||| ||||  ||||| |||| ||||||| ||| |||||    
T  6764102 ttctcagattaattttcctgatggaaatgttgtacaaagggtggtcttctcaagatttcttttcaaatcctaagaaacttcattgttttcagaaga 6764197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 109
Target Start/End: Complemental strand, 6527158 - 6527109
Alignment:
Q  60 gtgccttgcagaatggtcctgtgttacatctggaagcatataaaatgcag 109  Q
    |||| |||||||||||| ||||||||||| ||| ||||||||||||||||    
T  6527158 gtgcattgcagaatggttctgtgttacatttggcagcatataaaatgcag 6527109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 109
Target Start/End: Complemental strand, 6848739 - 6848690
Alignment:
Q  60 gtgccttgcagaatggtcctgtgttacatctggaagcatataaaatgcag 109  Q
    |||| |||||||||||| ||||||||||| ||| ||||||||||||||||    
T  6848739 gtgcgttgcagaatggttctgtgttacatttggcagcatataaaatgcag 6848690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 9719579 - 9719512
Alignment:
Q  39 cctaaggcataaatatgggtagtgccttgcagaatggtcctgtgttacatctggaagcatataaaatg 106  Q
    ||||| ||||||||  | |||||| ||||||||||||| | ||||||||| |||||||||| ||||||    
T  9719579 cctaaagcataaattggagtagtgtcttgcagaatggttccgtgttacatttggaagcataaaaaatg 9719512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 6859830 - 6859785
Alignment:
Q  202 aaaacatcattgtcttcggaagacatccttgttcagaaatacttct 247  Q
    |||| |||||||||||| || |||||||||||||| ||||||||||    
T  6859830 aaaatatcattgtcttcagacgacatccttgttcaaaaatacttct 6859785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 247
Target Start/End: Original strand, 6934162 - 6934202
Alignment:
Q  207 atcattgtcttcggaagacatccttgttcagaaatacttct 247  Q
    |||||||| ||| ||||||||||||||| ||||||||||||    
T  6934162 atcattgttttcagaagacatccttgttaagaaatacttct 6934202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 137 - 226
Target Start/End: Complemental strand, 6576383 - 6576295
Alignment:
Q  137 tttcttctcatgatgacaatgttgcgaaaagcatggtcttctctatatttcttctcaaggcctaaaaaacatcattgtcttcggaagaca 226  Q
    ||||||||||||||| |||| ||| | |||| |||| |||||| | |||||||||||| ||||||||||||||||||| ||| |||||||    
T  6576383 tttcttctcatgatggcaattttgtgcaaagtatggccttctccagatttcttctcaa-gcctaaaaaacatcattgtattcagaagaca 6576295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University