View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18858_high_16 (Length: 254)
Name: NF18858_high_16
Description: NF18858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18858_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 142 - 240
Target Start/End: Original strand, 51363555 - 51363654
Alignment:
| Q |
142 |
aatcaaatgctttcaaattctctctcatattaatctgctaatcttataatcatctaacaaattactatattcaatctgcta-atcttgggtttacctttg |
240 |
Q |
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| T |
51363555 |
aatcaaatgctttcaaattctctctcatattaatctgctaatcttacaatcatctaacaaattactatattcaaatttcaacatcttgggtttacctttg |
51363654 |
T |
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Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 26 - 96
Target Start/End: Original strand, 51363476 - 51363546
Alignment:
| Q |
26 |
gttgttgataaatctgttaccctttctatgaatgctcaaggagtgccttgatacaaagacagttgggcgct |
96 |
Q |
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| T |
51363476 |
gttgttgataaatctgttaccctttctatgaatgctcaaggagtgccttgatacaaagacagttgggcgct |
51363546 |
T |
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