View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18858_high_19 (Length: 240)
Name: NF18858_high_19
Description: NF18858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18858_high_19 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 54565307 - 54565529
Alignment:
| Q |
18 |
aaattctcaaaccttaatttcggatttggcaacagaattcagagtatcagggattccttgcacatctgtgaaatcaacnnnnnnnttcacaattttttct |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
54565307 |
aaattctcaaaccttaatttcggatttggcaacagaactcagagtatcagggattccttgcacatctgtgaaatcaacaaaaaaattcacaattttttct |
54565406 |
T |
|
| Q |
118 |
aaacaaaaatattttgctgaaaaagttgaaattgaggcgtaccgaaactcggttgatccaaaaccgaagatggaaaagcaattagggtttctgaattcga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54565407 |
aaacaaaaatattttgctgaaaaagttgaaattgaggcgtaccgaaactcggttgatccaaaaccgaagatggaaaagcaattagggtttctgaattcga |
54565506 |
T |
|
| Q |
218 |
attttcatcagaactcggtaatt |
240 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
54565507 |
attttcatcagaactcggtaatt |
54565529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University