View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18858_high_23 (Length: 217)
Name: NF18858_high_23
Description: NF18858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18858_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 201
Target Start/End: Original strand, 38422024 - 38422213
Alignment:
| Q |
12 |
aagaatatgagaggaaaatgtaataagatgtcaccattatatctgttgcatcaatataggttattccagtttttcaacagaagtgcttacatgtattaat |
111 |
Q |
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| T |
38422024 |
aagaatatgagaggaaaatgtaataagatgtcaccattatatctgttgcatcaatataggttattccagtttttcaacagaagtgcttacatgtattaat |
38422123 |
T |
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| Q |
112 |
aattgggcggcttcaactatgacttaatctataagaaagggagaaacaagacagtacttcaagcatgatctagaggagaagatcattgct |
201 |
Q |
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| T |
38422124 |
aattgggcggcttcaactatgacttaatctataagaaagggagaaacaagacagtacttcaagcatgatctagaggagaagatcattgct |
38422213 |
T |
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Target: chr5; HSP #2
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 12 - 201
Target Start/End: Original strand, 38414895 - 38415088
Alignment:
| Q |
12 |
aagaatatgagaggaaaatgtaataagatgtcaccattatatctgttgcatcaatataggttattccagtttttcaacagaagtgcttacatgtattaat |
111 |
Q |
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|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38414895 |
aagagtatgagaggaaaatgtaataagttgtcaccattatatctgttgcatcaatattggttattccagttcctcaacagaagtgcttacatgtattaat |
38414994 |
T |
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| Q |
112 |
aatt---gggcggcttcaactatgacttaatctataagaaagggagaa-acaagacagtacttcaagcatgatctagaggagaagatcattgct |
201 |
Q |
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| T |
38414995 |
aattcagggtcagcttcaaccatgacttaatctgtaagaaaggcacaagacaagacagtacttcaagcatgatctataagagaagatcactgct |
38415088 |
T |
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