View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18858_high_6 (Length: 406)
Name: NF18858_high_6
Description: NF18858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18858_high_6 |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 71 - 325
Target Start/End: Complemental strand, 30300444 - 30300182
Alignment:
| Q |
71 |
tcttgggtgaaagagtagggtttagggagggttttaagaaaggtgtcaatgtaggtgaagttgtgggattgggtgaatttggtgatgagggagagacaga |
170 |
Q |
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| T |
30300444 |
tcttgagtgaaagagtagggtttagggagggttttaagaagggtgtcaatgtaggtgaaattgtgggattgagtgaatttggtgatgagggagatacaga |
30300345 |
T |
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| Q |
171 |
aagggttgagttgggttatagtctttgcgggaagagtagagatggaagatggttataaaggagagagatggatttgttag------------ggttgttg |
258 |
Q |
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| T |
30300344 |
aa-ggttgagttgggttgtagtctttgcgagaagagtagagatggaagattgtt---aaggagagagatgggtttgttagagagtttgttaaggttgttg |
30300249 |
T |
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| Q |
259 |
cttcttttgaggttagccagactttgtggtggaagcgttggaggatgaggttgtctttgttgttgtt |
325 |
Q |
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| T |
30300248 |
cttcttttgaggttaaccagtctttgtggtggaaacgttggagaatgaggttatctttgttgttgtt |
30300182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 30300979 - 30300928
Alignment:
| Q |
15 |
agaactctcgtgaggataacacccattcctcatcatcacatcttccaaaacc |
66 |
Q |
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| T |
30300979 |
agaactctcattaggataacacccattcctcatcatcacatcttccaaaacc |
30300928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 94 - 195
Target Start/End: Complemental strand, 8445143 - 8445043
Alignment:
| Q |
94 |
agggagggttttaagaaaggtgtcaatgtaggtgaagttgtgggattgggtgaatttggtgatgagggagagacagaaagggttgagttgggttatagtc |
193 |
Q |
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| T |
8445143 |
agggagggttttaagaaaggtgtcaatgtaggtgaagttgtgggattgggtgaatttggtgacgagggagagacag-aagggttgggttgggttatagtc |
8445045 |
T |
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| Q |
194 |
tt |
195 |
Q |
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|| |
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| T |
8445044 |
tt |
8445043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 69 - 195
Target Start/End: Original strand, 64454 - 64567
Alignment:
| Q |
69 |
aatcttgggtgaaagagtagggtttagggagggttttaagaaaggtgtcaatgtaggtgaagttgtgggattgggtgaatttggtgatgagggagagaca |
168 |
Q |
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| T |
64454 |
aatcttgggtgaaagagtagggtttagagagggttttaagaaaggt------------gaagttgtgggattgggtgaatttggtgaagagggagagaca |
64541 |
T |
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| Q |
169 |
gaaagggttgagttgggttatagtctt |
195 |
Q |
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| T |
64542 |
g-aagggttgagttgggttatagtctt |
64567 |
T |
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