View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18858_low_10 (Length: 384)

Name: NF18858_low_10
Description: NF18858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18858_low_10
NF18858_low_10
[»] chr6 (1 HSPs)
chr6 (168-377)||(266975-267184)
[»] chr2 (4 HSPs)
chr2 (179-384)||(27918356-27918561)
chr2 (194-329)||(5595061-5595196)
chr2 (167-226)||(10880107-10880166)
chr2 (187-265)||(18684530-18684608)
[»] chr1 (2 HSPs)
chr1 (203-384)||(14131756-14131936)
chr1 (97-211)||(14131243-14131350)
[»] chr3 (3 HSPs)
chr3 (187-329)||(13760113-13760255)
chr3 (172-223)||(8555684-8555735)
chr3 (276-330)||(14485537-14485591)
[»] chr7 (1 HSPs)
chr7 (103-157)||(27027808-27027862)
[»] chr5 (1 HSPs)
chr5 (187-354)||(17758870-17759037)
[»] chr4 (2 HSPs)
chr4 (110-157)||(30940917-30940964)
chr4 (98-159)||(50464469-50464530)
[»] chr8 (1 HSPs)
chr8 (187-323)||(33213601-33213737)


Alignment Details
Target: chr6 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 168 - 377
Target Start/End: Original strand, 266975 - 267184
Alignment:
Q  168 aaagaaaggtacttatattatttcattaataataacgttttcaatacaacgaggaacatgataatgaatggtgggactacctaaaaatgtggcagccctt 267  Q
    |||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  266975 aaagaaaggtacgtatatcatttcattaataataatgttttcaatacaacgaggaacatgataatgaatggtgggattagctaaaaatgtggcagccctt 267074  T
Q  268 gctaggatatgagccgcctcatttgcttgtcgcgtactgaactctaccttggagtttgtaaagtgagaagtgaacaatcgtcggcattccaataaaatat 367  Q
    ||||||||||||||||||||||||||||||||  |  |||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  267075 gctaggatatgagccgcctcatttgcttgtcgtctgttgaactttaccttggagtttgtaaagttggaagtgaacaatcgtcggcattccaataaaatat 267174  T
Q  368 aaccagtctc 377  Q
    ||||||||||    
T  267175 aaccagtctc 267184  T

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Target: chr2 (Bit Score: 154; Significance: 1e-81; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 179 - 384
Target Start/End: Original strand, 27918356 - 27918561
Alignment:
Q  179 cttatattatttcattaataataacgttttcaatacaacgaggaacatgataatgaatggtgggactacctaaaaatgtggcagcccttgctaggatatg 278  Q
    ||||||| |||||||||||||||| ||||| |||||||||||||| |||||||||||| ||||||||| |||||||||||||| ||| |||||| |||||    
T  27918356 cttatataatttcattaataataatgtttttaatacaacgaggaatatgataatgaatagtgggactagctaaaaatgtggcaacccctgctagaatatg 27918455  T
Q  279 agccgcctcatttgcttgtcgcgtactgaactctaccttggagtttgtaaagtgagaagtgaacaatcgtcggcattccaataaaatataaccagtctcc 378  Q
    ||||||||||||| |||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27918456 agccgcctcattttcttgtcacctgctgaactctaccttggagtttgtaaagtgagaagtgaacaatcgtcggcattccaataaaatataaccagtctcc 27918555  T
Q  379 gtgaca 384  Q
    ||||||    
T  27918556 gtgaca 27918561  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 194 - 329
Target Start/End: Original strand, 5595061 - 5595196
Alignment:
Q  194 taataataacgttttcaatacaacgaggaacatgataatgaatggtgggactacctaaaaatgtggcagcccttgctaggatatgagccgcctcatttgc 293  Q
    |||||||||| | ||||||||||||||| | |||||||| |  | | || ||| || | ||||||||||| |  ||||   | |||||  ||||||||||    
T  5595061 taataataacttattcaatacaacgaggtatatgataataagagatagggctagctgataatgtggcagctcccgctaaagtgtgagctacctcatttgc 5595160  T
Q  294 ttgtcgcgtactgaactctaccttggagtttgtaaa 329  Q
    ||||||| |||| ||||| ||||| |||||||||||    
T  5595161 ttgtcgcctactaaactcgaccttagagtttgtaaa 5595196  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 10880166 - 10880107
Alignment:
Q  167 gaaagaaaggtacttatattatttcattaataataacgttttcaatacaacgaggaacat 226  Q
    ||||||||| | ||||||  ||||||||||||||||| | ||||||||||||||| ||||    
T  10880166 gaaagaaagatgcttatagcatttcattaataataacttgttcaatacaacgaggtacat 10880107  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 265
Target Start/End: Original strand, 18684530 - 18684608
Alignment:
Q  187 atttcattaataataacgttttcaatacaacgaggaacatgataatgaatggtgggactacctaaaaatgtggcagccc 265  Q
    |||||||||||||| |  | ||||||||||||||| |||| | ||| | ||||||||||| |||| | |||||||||||    
T  18684530 atttcattaataatcagatattcaatacaacgaggtacataagaataagtggtgggactaactaatattgtggcagccc 18684608  T

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Target: chr1 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 203 - 384
Target Start/End: Original strand, 14131756 - 14131936
Alignment:
Q  203 cgttttcaatacaacgaggaacatgataatgaatggtgggactacctaaaaatgtggcagcccttgctaggatatgagccgcctcatttgcttgtcgcgt 302  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14131756 cgttttcaatacaacgaggaacatgataatgaatggtgggactagctaaaaatgtg-cagcccttgctaggatatgagccgcctcatttgcttgtcgcgt 14131854  T
Q  303 actgaactctaccttggagtttgtaaagtgagaagtgaacaatcgtcggcattccaataaaatataaccagtctccgtgaca 384  Q
     ||||||||||| |||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||    
T  14131855 gctgaactctacattggagtttgtaaagtgataagtgaacaatcgtaggtattccaataaaatataaccagtctccgtgaca 14131936  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 211
Target Start/End: Original strand, 14131243 - 14131350
Alignment:
Q  97 aatttatttttctatccaaaaagatctagctatgcagcttgttacccgcttgccttctatttannnnnnngaaagaaaggtacttatattatttcattaa 196  Q
    |||||||||||||||||||||| ||||||      ||||||||||||||||| |||||||| |       |||||||| ||| |||||| ||||||||||    
T  14131243 aatttatttttctatccaaaaa-atctag------agcttgttacccgcttgtcttctattcatttttttgaaagaaatgtatttatatcatttcattaa 14131335  T
Q  197 taataacgttttcaa 211  Q
    |||||||||||||||    
T  14131336 taataacgttttcaa 14131350  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 187 - 329
Target Start/End: Original strand, 13760113 - 13760255
Alignment:
Q  187 atttcattaataataacgttttcaatacaacgaggaacatgataatgaatggtgggactacctaaaaatgtggcagcccttgctaggatatgagccgcct 286  Q
    ||||||||||||||||  | ||||||||||| ||| |||  | ||| | ||||||||||| |||| |||| ||||||||  || ||||  |||||  |||    
T  13760113 atttcattaataataagatgttcaatacaacaaggtacaatagaataagtggtgggactagctaataatggggcagccccggcaaggacgtgagctacct 13760212  T
Q  287 catttgcttgtcgcgtactgaactctaccttggagtttgtaaa 329  Q
    ||||||||||||||  | | ||||| ||||| |||||||||||    
T  13760213 catttgcttgtcgcagagtaaactcaaccttagagtttgtaaa 13760255  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 172 - 223
Target Start/End: Original strand, 8555684 - 8555735
Alignment:
Q  172 aaaggtacttatattatttcattaataataacgttttcaatacaacgaggaa 223  Q
    |||||||||||||  |||||||||||||||| ||| ||||||||| ||||||    
T  8555684 aaaggtacttatagcatttcattaataataatgttctcaatacaatgaggaa 8555735  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 330
Target Start/End: Complemental strand, 14485591 - 14485537
Alignment:
Q  276 atgagccgcctcatttgcttgtcgcgtactgaactctaccttggagtttgtaaag 330  Q
    |||||||||| |||| ||||||||| || | |||||||||| |||||||||||||    
T  14485591 atgagccgccgcattcgcttgtcgcctaataaactctacctgggagtttgtaaag 14485537  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 157
Target Start/End: Original strand, 27027808 - 27027862
Alignment:
Q  103 tttttctatccaaaaagatctagctatgcagcttgttacccgcttgccttctatt 157  Q
    |||| |||||||||||||||||||  || |||||||||||| |||||||||||||    
T  27027808 ttttgctatccaaaaagatctagcggtgtagcttgttacccacttgccttctatt 27027862  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 187 - 354
Target Start/End: Complemental strand, 17759037 - 17758870
Alignment:
Q  187 atttcattaataataacgttttcaatacaacgaggaacatgataatgaatggtgggactacctaaaaatgtggcagcccttgctaggatatgagccgcct 286  Q
    ||||||||| ||||||  | ||||||| || |||| |||||||||| |||  |  ||||| || | ||||||||| |||  |||| | | |||||   ||    
T  17759037 atttcattattaataaaatgttcaatataatgaggtacatgataataaattttacgactagctgataatgtggcaacccccgctaaggtgtgagctatct 17758938  T
Q  287 catttgcttgtcgcgtactgaactctaccttggagtttgtaaagtgagaagtgaacaatcgtcggcat 354  Q
    |||||||||||||| |||| ||||| | ||| |||||||||||||| |  || |||||| ||||||||    
T  17758937 catttgcttgtcgcctactaaactcgatcttagagtttgtaaagtgtgtggtaaacaattgtcggcat 17758870  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 110 - 157
Target Start/End: Original strand, 30940917 - 30940964
Alignment:
Q  110 atccaaaaagatctagctatgcagcttgttacccgcttgccttctatt 157  Q
    |||||||||| |||||| | |||||||||| |||||||||||||||||    
T  30940917 atccaaaaaggtctagcgacgcagcttgttgcccgcttgccttctatt 30940964  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 159
Target Start/End: Original strand, 50464469 - 50464530
Alignment:
Q  98 atttatttttctatccaaaaagatctagctatgcagcttgttacccgcttgccttctattta 159  Q
    ||||||||| | ||||||||||| |||||   ||||||||||  ||||||||||||||||||    
T  50464469 atttattttgccatccaaaaagacctagcggcgcagcttgttgtccgcttgccttctattta 50464530  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 323
Target Start/End: Complemental strand, 33213737 - 33213601
Alignment:
Q  187 atttcattaataataacgttttcaatacaacgaggaacatgataatgaatggtgggactacctaaaaatgtggcagcccttgctaggatatgagccgcct 286  Q
    |||||||| |||||||   |||||||||||  ||| | |||||||| ||||  ||||||| ||| |||||| |   | ||||| || | |||||| ||      
T  33213737 atttcatttataataattgtttcaatacaagaagggatatgataataaatgacgggactagctagaaatgtagtctctcttgcaagcaaatgagctgctg 33213638  T
Q  287 catttgcttgtcgcgtactgaactctaccttggagtt 323  Q
    |||||||||||||| || ||||||||||| |||||||    
T  33213637 catttgcttgtcgcctagtgaactctaccatggagtt 33213601  T

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