View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18858_low_11 (Length: 369)
Name: NF18858_low_11
Description: NF18858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18858_low_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 16 - 351
Target Start/End: Complemental strand, 4714684 - 4714349
Alignment:
| Q |
16 |
aatataaagtggatgctcgagtgaagtcttgggaatattttggcatctaagtaagatatataaaagtcacggagaaagctccaaaacgtctctttttaaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4714684 |
aatataaagtggatgctcgagtgaagtcttgggaatattttggcatctaagtaagatatataaaagtcacggagaaagctccaaaacgtctctttttaaa |
4714585 |
T |
|
| Q |
116 |
tagaaaagtatttggcccatttttgttaaattgtgaccacatacagggcatgacaactaagatattagcatgtttaatttttctaagaaaaattccaaat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4714584 |
tagaaaagtatttggcccatttttgttaaattgtgaccacatacagggcatgacaactaagatattagcatgtttaatttttctaagaaaaattccaaat |
4714485 |
T |
|
| Q |
216 |
cacgtgtttgggaaataattataattattactcataaattttatctttaatagacctacaattgctgaattataagctttttcttttgtgacccacttgg |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4714484 |
cacgtgtttgggaaataattataattattactcataaattttatctttaatagacctacaattgctgaattataagctttttcttttgtgacccacttgg |
4714385 |
T |
|
| Q |
316 |
tgcaataatcgttacaatgtaagagtaatgcgttat |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
4714384 |
tgcaataatcgttacaatgtaagagtaatgcgttat |
4714349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 36 - 325
Target Start/End: Complemental strand, 4704500 - 4704224
Alignment:
| Q |
36 |
gtgaagtcttgggaatattttggcatctaagtaagatatataaaagtcacggagaaagctccaaaacgtctctttttaaatagaaaagtatttggcccat |
135 |
Q |
| |
|
|||||||||| |||||||||||| ||| ||| | || | || ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4704500 |
gtgaagtctttggaatattttggtatcaaag--atattttaaacagtcacggagaaagcaccaaaacgtcttattttaaatagaaaagtatttggcccat |
4704403 |
T |
|
| Q |
136 |
ttttg--ttaaattgtgaccacatacagggcatgacaactaagatattagcatgtttaatttttctaagaaaaattccaaatcacgtgtttgggaaataa |
233 |
Q |
| |
|
|||| |||| |||| ||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
4704402 |
tttttgtttaatttgtaaccacatacagggcaggacaacgaagatattagcatgtttaatttttccaagaaaaattccaaatcacgtgttctggaaa--- |
4704306 |
T |
|
| Q |
234 |
ttataattattactcataaattttatctttaatagacctacaattgctgaattataagctttttcttttgtgacccacttggtgcaataatc |
325 |
Q |
| |
|
||||||||| |||||||||||||||||||||| || | ||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
4704305 |
--ataattattgctcataaattttatctttaatatac--------gaaaaattataagctttttcttttgtgtcccacttgatgcaataatc |
4704224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 167 - 329
Target Start/End: Complemental strand, 4705707 - 4705551
Alignment:
| Q |
167 |
gacaactaagatattagcatgtttaatttttctaagaaaaattccaaatcacgtgtttgggaaataattataattattactcataaattttatctttaat |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| || |||||| |||||||| ||||||| |||| |
|
|
| T |
4705707 |
gacaactaagatattagcatgtttaatttttctaggaaaaattccaaattacgtgtttgggaaa-----atgattattgctcataaactttatctataat |
4705613 |
T |
|
| Q |
267 |
agacctacaattgctgaattataagctttttcttttgtgacccacttggtgcaataatcgtta |
329 |
Q |
| |
|
| ||| | ||||||| |||||| |||||| ||||||||| |||| ||||||||||||| |||| |
|
|
| T |
4705612 |
aaaccaaaaattgctcaattat-agctttatcttttgtgtcccagttggtgcaataatggtta |
4705551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 167 - 329
Target Start/End: Complemental strand, 4788590 - 4788427
Alignment:
| Q |
167 |
gacaactaagatattagcatgtttaatttttctaagaaaaattccaaatcacgtgtttgggaaataattataattattactcat-aaat-------ttta |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||| ||||| |||| |||| |
|
|
| T |
4788590 |
gacaactaagatattagcatgtttaatttttctaggaaaaa-tccaaatcacgtgtttgggaaa-----ataattattgctcatgaaatttatatattta |
4788497 |
T |
|
| Q |
259 |
tctttaatagacctacaattgctgaattataagctttttcttttgtgacccacttggtgcaataatcgtta |
329 |
Q |
| |
|
| | ||||||||||| |||||||||||||| |||||| ||||||||| |||| |||||||||||||||||| |
|
|
| T |
4788496 |
tatataatagacctaaaattgctgaattat-agctttatcttttgtgtcccagttggtgcaataatcgtta |
4788427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 170 - 329
Target Start/End: Complemental strand, 4700859 - 4700707
Alignment:
| Q |
170 |
aactaagatattagcatgtttaatttttctaagaaaaattccaaatcacgtgtttgggaaataattataattattactcataaattttatctttaataga |
269 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||| ||||||| |
|
|
| T |
4700859 |
aactaagatattaacatgttta-tttttctaagaaaaattccaaatccaatgtttgggaaa-----ataattattgctcataaattttatctataataga |
4700766 |
T |
|
| Q |
270 |
cctacaattgctgaattataagctttttcttttgtgacccacttggtgcaataatcgtta |
329 |
Q |
| |
|
|||| ||||||| ||||| ||| ||||| ||| || |||||||||||||||||| |||| |
|
|
| T |
4700765 |
cctaaaattgctaaattagaag-tttttttttcttgtcccacttggtgcaataattgtta |
4700707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 237 - 329
Target Start/End: Complemental strand, 4833852 - 4833760
Alignment:
| Q |
237 |
taattattactcataaattttatctttaatagacctacaattgctgaattataagctttttcttttgtgacccacttggtgcaataatcgtta |
329 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||| || ||| ||||||||| ||||||||||||| |
|
|
| T |
4833852 |
taattattgctcataaattttatctataatagacctaaaattgctgaattataagctttttcattcgtgccccacttggcgcaataatcgtta |
4833760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 118 - 181
Target Start/End: Complemental strand, 4705786 - 4705723
Alignment:
| Q |
118 |
gaaaagtatttggcccatttttgttaaattgtgaccacatacagggcatgacaactaagatatt |
181 |
Q |
| |
|
||||||||||||| ||| ||||||||| ||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
4705786 |
gaaaagtatttggaccaattttgttaatttgtgaccacatacaaggcaagacaactaagatatt |
4705723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 119 - 194
Target Start/End: Complemental strand, 4833922 - 4833848
Alignment:
| Q |
119 |
aaaagtatttggcccatttttgttaaattgtgaccacatacagggcatgacaactaagatattagcatgtttaatt |
194 |
Q |
| |
|
|||||||||| | ||||||| ||||| |||||||||||| ||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
4833922 |
aaaagtattttgaccatttt-gttaatttgtgaccacattcagggcaggacaacttagatattagcatgtttaatt |
4833848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 36 - 106
Target Start/End: Complemental strand, 4701039 - 4700971
Alignment:
| Q |
36 |
gtgaagtcttgggaatattttggcatctaagtaagatatataaaagtcacggagaaagctccaaaacgtct |
106 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| | || || || |||||| |||||||||||||||||||| |
|
|
| T |
4701039 |
gtgaagtctttggaatattttgccatctaag--atatttaaaatagtcacagagaaagctccaaaacgtct |
4700971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 36 - 122
Target Start/End: Complemental strand, 4834095 - 4834012
Alignment:
| Q |
36 |
gtgaagtcttgggaatattttggcatctaagtaagatatataaaagtcacggagaaagctccaaaacgtctctttttaaatagaaaa |
122 |
Q |
| |
|
|||||||||| ||||||||||||||||||| | || ||||| ||||| |||||||||||| |||||||| ||||||| |||||| |
|
|
| T |
4834095 |
gtgaagtctttagaatattttggcatctaag--atatttataacagtcatggagaaagctcc-aaacgtcttattttaaaaagaaaa |
4834012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 128
Target Start/End: Complemental strand, 4788746 - 4788706
Alignment:
| Q |
88 |
agaaagctccaaaacgtctctttttaaatagaaaagtattt |
128 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
4788746 |
agaaagctccaaaacgtcttcttttcaatagaaaagtattt |
4788706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University