View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18858_low_13 (Length: 323)
Name: NF18858_low_13
Description: NF18858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18858_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 13 - 280
Target Start/End: Complemental strand, 23470697 - 23470427
Alignment:
| Q |
13 |
aatatttgtaggaagagatcaacctcttaaatgaatcttagttctctcatgatgattaatatttacagttcgacgcagatgatgtttttgttaaccaaaa |
112 |
Q |
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| T |
23470697 |
aatatttgtaggaagaggtcaacctcttaaatgaatcttaattttctcatgatgattaatatttacggttccacgcagatgatgtttttgttaaccaaaa |
23470598 |
T |
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| Q |
113 |
cgaattaaaatctgcatgtagccatcc-----aaaagaaaattttcatatgttgttttctgttcctttccttaatttaacacatatacaagtaacaaatt |
207 |
Q |
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|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23470597 |
agaattaaaatctgcatgtagccatccaaattaaaagaaaaatttcatatgttgttttctgttcctttccttaatttaacacatatacaagtaacaaatt |
23470498 |
T |
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| Q |
208 |
gtatacctgaaattgacatttctctatacacacacataaatatgtgactgaacaaaagatgagtgatgcatgt |
280 |
Q |
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|| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
23470497 |
gtgtacctgaaattgacatttctctat--acacacataaatatgtgactgaacaaaagatgagagatgcatgt |
23470427 |
T |
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