View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18858_low_19 (Length: 250)
Name: NF18858_low_19
Description: NF18858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18858_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 3 - 236
Target Start/End: Complemental strand, 39135403 - 39135171
Alignment:
| Q |
3 |
gttgttatttttggtagcaatgagtttgttgtgtagaggtgtggggtccacaaaagatactccaaaattgcaaataatttcctcataagaacaaacaatg |
102 |
Q |
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| T |
39135403 |
gttgttatttttggtagcaatgagtttgttgtgtggaggtgtggggtccacaaaagatactccaaaattgcaaataatttcctcataaaacaaaacaatg |
39135304 |
T |
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| Q |
103 |
tgtggggttgtagaaattaattaaatcatagtaacatataaacaacaatgattatcattattgacccctcnnnnnnnnnnntgattatcattattgatta |
202 |
Q |
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| T |
39135303 |
tgcggggttgtagaaattaattaaatcatagtaacatataaacaacaatgattatcattattgacccct-aaaaaaaaaaacgattatcgttattgatta |
39135205 |
T |
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| Q |
203 |
aagttgcctctaaattataatataacttcttcat |
236 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
39135204 |
aagttgcctctaaattataatataacttcttcat |
39135171 |
T |
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