View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18858_low_2 (Length: 857)

Name: NF18858_low_2
Description: NF18858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18858_low_2
NF18858_low_2
[»] chr4 (1 HSPs)
chr4 (16-847)||(41630015-41630831)


Alignment Details
Target: chr4 (Bit Score: 705; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 705; E-Value: 0
Query Start/End: Original strand, 16 - 847
Target Start/End: Complemental strand, 41630831 - 41630015
Alignment:
Q  16 cagaattctagtactattatcaagtatgaaccaagttggatagtacaatgaaaaaacttcaactgttttaccaattcatcatgtaactgtataacacata 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  41630831 cagaattctagtactattatcaagtatgaaccaagttggatagtacaatgaagacacttcaactgttttaccaattcatcatgtaactgtataacacata 41630732  T
Q  116 gcagacagttggtgaaaatcataactaatactcatctaacattatagaatcaaaaagcatttgatctatcaattaaacataatgaaatattctccataca 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41630731 gcagacagttggtgaaaatcataactaatactcatctaacattatagaatcaaaaagcatttgatctatcaattaaacataatgaaatattctccataca 41630632  T
Q  216 tnnnnnnnttaaaataaaccaatctacctaattacccaatcccaacaaattaacagctaataattaattaaccaatattaattattccat------agcc 309  Q
    |       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||    
T  41630631 taaaaaaattaaaataaaccaatctacctaattacccaatcccaacaaattaacagctaataattaattaaccaatattaattattccatttccatagcc 41630532  T
Q  310 acacaattaggcatcagaaacaacactaagatcatcttcttcttcaagtggagctggcatattgagatctatgaaactctctttgaatctagcagcagta 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  41630531 acacaattaggcatcagaaacaacactaagatcatcttcttcttcaagtggagctggcatattgagatctatgaaactgtctttgaatctagcagcagta 41630432  T
Q  410 ggattaacattaacattaacattaacgttaacattagcagtggaagttgatgaagaagggatcatgagatgagatctcttgtgaccaccaagtgcttgac 509  Q
    |||||||||||||||                  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41630431 ggattaacattaaca------------------ttagcagtggaagttgatgaagaagggatcatgagatgagatctcttgtgaccaccaagtgcttgac 41630350  T
Q  510 cagaaccaaaaaccttaaaacaaaatggacattcaaaaatcttatcatcgttaccattaccattcttcttcgcttcatcgcgacaacaaatacttctatg 609  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||    
T  41630349 cagaaccaaaaaccttaaaacaaaatggacattcaaaaatcttatcatcgttaccattaccattcttc---gcttcatcgcgacaacaaatacttctatg 41630253  T
Q  610 acttcccaatgctctagaagatcgaaatgttttcccacaattttcgcataaatgcttcccacgaactcgtttcaataacttcaccttcgatattttctcc 709  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41630252 acttcccaatgctctagaagatcgaaatgttttcccacaattttcgcataaatgcttcccacgaactcgtttcaataacttcaccttcgatattttctcc 41630153  T
Q  710 accgatccctcatcttcttcttgttccacattgttgtcgttgttcatctttcgactccatttgtccctcgaaagcatcatgagacacatagcaacatctt 809  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41630152 accgatccctcatcttcttcttgttccacattgttgacgttgttcatctttcgactccatttgtccctcgaaagcatcatgagacacatagcaacatctt 41630053  T
Q  810 cttcaggtgaagtatcagaaactgaactcacaggttct 847  Q
    ||||||||||||||||||||||||||||||||||||||    
T  41630052 cttcaggtgaagtatcagaaactgaactcacaggttct 41630015  T

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