View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18858_low_21 (Length: 247)
Name: NF18858_low_21
Description: NF18858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18858_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 142 - 240
Target Start/End: Complemental strand, 14131038 - 14130940
Alignment:
| Q |
142 |
tatcttgcatggttgttgtgtttgtgggacatcacatgatatatatacaaaacaagcaatgctttatgaaattctctaacgtacgtatatgatgatgtc |
240 |
Q |
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| T |
14131038 |
tatcttgcatggttgttgtgtttgtgggacatcacatgatatatatacaaaacaagcaatgctttatgaaattctctaacgtacgtatacgatgatgtc |
14130940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 14131161 - 14131079
Alignment:
| Q |
18 |
atatccccaatgaacaagtactcctcattcctcaaacaaaaatatctttgtgctatgttacgtcactgtgaggaagagttaga |
100 |
Q |
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| T |
14131161 |
atatccccaatgaacaagtactcctcattcctcaaacaaaaatatctttgtgctatgttacgtcactgtgaggaagagttaga |
14131079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 14131209 - 14131176
Alignment:
| Q |
1 |
caaaatagtgtgaagtgatatccccaatgaacaa |
34 |
Q |
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| T |
14131209 |
caaaatagtgtgaagtgatatccccaatgaacaa |
14131176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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