View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18858_low_23 (Length: 239)
Name: NF18858_low_23
Description: NF18858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18858_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 80 - 223
Target Start/End: Original strand, 39135764 - 39135907
Alignment:
| Q |
80 |
atgtcctggaaatttttcaaagatttcaaagctgaaggttgaaagnnnnnnnnnnnnncttcccaggatgttgaggtgttcttgtaattgctgagaggtt |
179 |
Q |
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| T |
39135764 |
atgtcctggaaatttttcaaagatttcaaagctgaaggttgaaagtttttatttttttcttcccaggatgttgaggtgttcttgtaattgctgagaggtt |
39135863 |
T |
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| Q |
180 |
atagtttctatagttgaatgatggatattgttgaggctactcat |
223 |
Q |
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| T |
39135864 |
atagtttctatagttgaatgatggatattgttgaggctactcat |
39135907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 217
Target Start/End: Complemental strand, 39877818 - 39877738
Alignment:
| Q |
138 |
cttcccaggatgttgaggtgttcttgtaattgctgagaggttatagttt-ctatagttgaatgatggatattgttgaggct |
217 |
Q |
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| T |
39877818 |
cttcccaggattttgaggggtttgtgtaatagctgagagtttaaagttttctatagttgaatcatggatgttgtcgaggct |
39877738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 39423062 - 39422983
Alignment:
| Q |
139 |
ttcccaggatgttgaggtgttcttgtaattgctgagaggttatagttt-ctatagttgaatgatggatattgttgaggct |
217 |
Q |
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| T |
39423062 |
ttcccaggattttgaggtgtttgtgttatagctgagagtttaaagttttctatagttcaatcatggatgttgttgaggct |
39422983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 39416875 - 39416830
Alignment:
| Q |
172 |
gagaggttatagtttctatagttgaatgatggatattgttgaggct |
217 |
Q |
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| T |
39416875 |
gagagtttacagtttctatagttcaatgatggatgttgttgaggct |
39416830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 173
Target Start/End: Complemental strand, 39488589 - 39488556
Alignment:
| Q |
140 |
tcccaggatgttgaggtgttcttgtaattgctga |
173 |
Q |
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| T |
39488589 |
tcccaggattttgaggtgttcttgtaattgctga |
39488556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 19806205 - 19806266
Alignment:
| Q |
138 |
cttcccaggatgttgaggtgttcttgtaattgctgagaggttatagtttctatagttgaatg |
199 |
Q |
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| T |
19806205 |
cttcccaggattttgaggtgttcttgtaattgctgagaagttacagtttctatagttgaatg |
19806266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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