View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18858_low_4 (Length: 630)

Name: NF18858_low_4
Description: NF18858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18858_low_4
NF18858_low_4
[»] chr8 (3 HSPs)
chr8 (14-612)||(12885146-12885747)
chr8 (282-612)||(12897055-12897385)
chr8 (434-541)||(12881215-12881322)
[»] chr7 (1 HSPs)
chr7 (431-547)||(28453783-28453896)


Alignment Details
Target: chr8 (Bit Score: 431; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 14 - 612
Target Start/End: Original strand, 12885146 - 12885747
Alignment:
Q  14 atataaaaataactaaaatttgatacttaataaactctgagcttaacattcttaatagctgatctctcaaactagtagcgcatatcgatcattacaaact 113  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  12885146 atataaaaataactaaaatttgatacttaataaactctgaacttaacattcttcatagccgatctctcaaactagtagcgcatatcgatcattacaaact 12885245  T
Q  114 tgacctaaaaacaccataagaacaaacatgttcgaaaggattcaacaaaggaataaacaaaacgtgaaaaacaattcatagccagtctacttggtaacgc 213  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||| ||||| ||| |||| |||||||||| |||||||    |||||||||||||||    
T  12885246 tgacctaaaaacaccataagaacaaacatgttcaaaaggatgcaacataggaacaaaaaaaatgtgaaaaacatttcatag----tctacttggtaacgc 12885341  T
Q  214 ggtgggatgaaggaaacacatgatgaatgttaacgctgaatttgagatttccaaatacacatt-------caatcaactatataactggagcaatcagag 306  Q
    |||||||||||||||||||| |  ||||| |||| |||||||||||||||||||||||||||        |||||||||||||||| |||| |||| |||    
T  12885342 ggtgggatgaaggaaacacacggcgaatgataacactgaatttgagatttccaaatacacataacgcatccaatcaactatataaccggagtaatcggag 12885441  T
Q  307 gtttatttgaaaagaatgctgtcaaattttgttccacaagttggcagatacccatcaaagactcagaagttacaacagctgcatgaggtgaaaggacaac 406  Q
     |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12885442 ctttatttgaaaagaatgctgtcaaattttgttccacaatttggcggatacccatcaaagactcagaagttacaacagctgcatgaggtgaaaggacaac 12885541  T
Q  407 attattcaatgaatagaattctttaggaacatgaggttcattctcaaacacatccaaaccagcacctccaatttcatcttcaatcaaacacttcaacaat 506  Q
    ||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12885542 attatccaatgaaaagaagtctttaggaacatgaggttcattctcaaacacatccaaaccagcacctccaatttcatcttcaatcaaacacttcaacaat 12885641  T
Q  507 tccttttcatcaatgagagctcctcttccaacattcactatgattccaccttttcctagtgccaacatcacttctttgttgacaatgtaatttgtttggt 606  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| |||||||| | ||||||||| |||||||||||||||||||   |||||||||    
T  12885642 tccttttcatcaatgagagcacctcttccaacattcactatgattcctccttttcccaatgccaacatgacttctttgttgacaatgtgccttgtttggt 12885741  T
Q  607 cgttta 612  Q
    ||||||    
T  12885742 cgttta 12885747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 282 - 612
Target Start/End: Original strand, 12897055 - 12897385
Alignment:
Q  282 aactatataactggagcaatcagaggtttatttgaaaagaatgctgtcaaattttgttccacaagttggcagatacccatcaaagactcagaagttacaa 381  Q
    |||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    |||||  ||||||  |    
T  12897055 aactatataactggagtaatcagaggcttatttgaaaagaatgctatcaaattttgttccacaagttggcagatacccatatgtgactctaaagttaaga 12897154  T
Q  382 cagctgcatgaggtgaaaggacaacattattcaatgaatagaattctttaggaacatgaggttcattctcaaacacatccaaaccagcacctccaatttc 481  Q
    |||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||    
T  12897155 cagctgaatgaggtgaaaggacaacattatccaatgaatagaagtctttaggaacatgaggttcattttcaaacacatccaaaccagcacctccaatctc 12897254  T
Q  482 atcttcaatcaaacacttcaacaattccttttcatcaatgagagctcctcttccaacattcactatgattccaccttttcctagtgccaacatcacttct 581  Q
     |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  12897255 ttcttcaatcaaacacttcaacaattccttttcatcaatgagagcacctcttccaacattcactatgattccgccttttcctagtgccaacattacttct 12897354  T
Q  582 ttgttgacaatgtaatttgtttggtcgttta 612  Q
    |||||||||||||   |||||||||||||||    
T  12897355 ttgttgacaatgtgccttgtttggtcgttta 12897385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 434 - 541
Target Start/End: Original strand, 12881215 - 12881322
Alignment:
Q  434 aacatgaggttcattctcaaacacatccaaaccagcacctccaatttcatcttcaatcaaacacttcaacaattccttttcatcaatgagagctcctctt 533  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||  |||| ||||||||||| | |||||  || |||||||| ||| | ||||||    
T  12881215 aacatgaggttcattctcaaacacatccaaaccagcaccagcaatttctccttccatcaaacacttgatcaattgtttctcatcaataagaccacctctt 12881314  T
Q  534 ccaacatt 541  Q
    ||||||||    
T  12881315 ccaacatt 12881322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 431 - 547
Target Start/End: Complemental strand, 28453896 - 28453783
Alignment:
Q  431 aggaacatgaggttcattctcaaacacatccaaaccagcacctccaatttcatcttcaatcaaacacttcaacaattccttttcatcaatgagagctcct 530  Q
    |||||||| ||| ||||||||||||||||||||||||||||| ||||| |   |||| |||||||| |||| ||| |||   |||||||| ||||  | |    
T  28453896 aggaacattaggctcattctcaaacacatccaaaccagcaccaccaatatgtccttctatcaaacaattcaccaactcc---tcatcaattagagaccat 28453800  T
Q  531 cttccaacattcactat 547  Q
    ||||||||||| |||||    
T  28453799 cttccaacattgactat 28453783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University