View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18858_low_5 (Length: 564)
Name: NF18858_low_5
Description: NF18858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18858_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 489; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 19 - 547
Target Start/End: Complemental strand, 1464553 - 1464025
Alignment:
| Q |
19 |
cacagacacactttcacttgtaagtgtttatgccgcataattcattactcttcaacaataatttccacttctgaaatctttttcaaccattcaattggct |
118 |
Q |
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|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1464553 |
cacagacacactttcactcgtcagtgtttatgccgcataattcattactcttcaacaataatttccacttctgaaatctttttcaaccattcaattggct |
1464454 |
T |
|
| Q |
119 |
taccttgccatttcagcacgtttcttggcttgctctgcaatctctgaaagctcctcatagctactatactcattgatagtgttggaggtaggaggctgaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1464453 |
taccttgccatttcagcacgtttcttggcttgctctgcaatctctgaaagctcctcatagctactatactcattgatagtgttggaggtaggaggctgaa |
1464354 |
T |
|
| Q |
219 |
gaccatggcgtgatctttgcgctgatgcccattgtgcttccctattttctctaccatagtctttctttgatgtgaaggcagtctgtaacgagaaaatatg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1464353 |
gaccatggcgtgatctttgcgctgatgcccattgtgcttccctattttctctaccatagtctttctttgatgtgaaggcagtctgtaacgagaaaatatg |
1464254 |
T |
|
| Q |
319 |
aaacaattagataaaaggnnnnnnnntgcaagtgcacgaggctatcatcaagcggagtatggacaaggtagatatgtacgcggccttatccctgcaaaca |
418 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1464253 |
aaacaattagataaaaggaaaaaaaatgcaagtgcacgaggctatcagcaagcggagtatggacaaggtagatatgtacgcggccttatccctgcaaaca |
1464154 |
T |
|
| Q |
419 |
gataggttatttccaatatttgaacataagtcgacaaccttacagttgcacaaaggcttgtccttatcaacaatgtgacgaaatgataaagtgaaaagga |
518 |
Q |
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| T |
1464153 |
gataggttatttccaatatttgaacataagtcgacaaccttacagttgcacaaaggcttgtccttatcaacaatgtgacgaaatgataaagtgaaaaaga |
1464054 |
T |
|
| Q |
519 |
aaataacctaccttgttttccaagatatt |
547 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
1464053 |
aaataacctaccttgttttccaagatatt |
1464025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 58 - 285
Target Start/End: Complemental strand, 1491905 - 1491676
Alignment:
| Q |
58 |
attcattactcttcaaca-ataatttccacttctgaaatctttttcaa-ccattcaattggcttaccttgccatttcagcacgtttcttggcttgctctg |
155 |
Q |
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|||||||||||||||| | ||| ||||||||||| ||||||||| || ||||| || ||| ||| ||||| | ||||||| |||||||| ||||||||| |
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| T |
1491905 |
attcattactcttcaatacatactttccacttctttaatcttttttaaaccatttaaatggattaacttgcaacttcagcatgtttcttgtcttgctctg |
1491806 |
T |
|
| Q |
156 |
caatctctgaaagctcctcatagctactatactcattgatagtgttggaggtaggaggctgaagaccatggcgtgatctttgcgctgatgcccattgtgc |
255 |
Q |
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||||||||||||||||| ||||||||||| ||||||| | ||| |||||| ||| ||||||||||| |||||| ||| | || | |||||||||| |
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| T |
1491805 |
caatctctgaaagctccctatagctactattttcattgaaaaggtttgaggtaaaaggttgaagaccatgaagtgatccttgtgttgtttcccattgtgc |
1491706 |
T |
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| Q |
256 |
ttccctattttctctaccatagtctttctt |
285 |
Q |
| |
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||| || | || | |||||||||||||||| |
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| T |
1491705 |
ttctctctgttatttaccatagtctttctt |
1491676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 97 - 285
Target Start/End: Original strand, 1490388 - 1490576
Alignment:
| Q |
97 |
tttttcaaccattcaattggcttaccttgccatttcagcacgtttcttggcttgctctgcaatctctgaaagctcctcatagctactatactcattgata |
196 |
Q |
| |
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||||| |||||||||| ||||||||||||| | | || | |||||||| |||||||| ||||||||||||||||| |||||||||| ||||| | | |
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| T |
1490388 |
tttttaaaccattcaaatggcttaccttgcaactacaacgtgtttcttgtcttgctctacaatctctgaaagctccctttagctactattttcattcaaa |
1490487 |
T |
|
| Q |
197 |
gtgttggaggtaggaggctgaagaccatggcgtgatctttgcgctgatgcccattgtgcttccctattttctctaccatagtctttctt |
285 |
Q |
| |
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||| |||||| |||||||| |||||| |||||| || |||| | |||||||||||| || | |||| |||||||||||||||| |
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| T |
1490488 |
aggttcgaggtaaaaggctgaacaccatgaagtgatccctgtgctgctttccattgtgcttctctctcttctttaccatagtctttctt |
1490576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 121 - 304
Target Start/End: Original strand, 1495269 - 1495455
Alignment:
| Q |
121 |
ccttgccatttcagcacgtttcttggcttgctctgcaatctctgaaagctcctcatagctactatactcattgatagtgttggaggta---ggaggctga |
217 |
Q |
| |
|
|||||| | |||||||||| ||||||||||||| |||||||| ||||| || ||||||| | | ||||||| | |||||||| ||||||||| |
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| T |
1495269 |
ccttgcaacttcagcacgtctcttggcttgctccgcaatctccgaaagttctctatagctattcttttcattgaaaacgttggaggcttccggaggctga |
1495368 |
T |
|
| Q |
218 |
agaccatggcgtgatctttgcgctgatgcccattgtgcttccctattttctctaccatagtctttctttgatgtgaaggcagtctgt |
304 |
Q |
| |
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||||| || ||| ||| ||||| | ||||||||||||||||| | |||| | |||||||||||||||| ||||||||||||||| |
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| T |
1495369 |
agaccgtgaagtgttctctgcgcagccgcccattgtgcttccctctcttcttttccatagtctttctttgtagtgaaggcagtctgt |
1495455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 167; Significance: 4e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 26 - 547
Target Start/End: Complemental strand, 26792250 - 26791741
Alignment:
| Q |
26 |
acactttcacttgtaagtgtttatgccgcataattcattactcttcaacaataatttccacttctgaaatctttttcaaccattcaattggcttaccttg |
125 |
Q |
| |
|
||||||||||| ||||||||| || |||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
26792250 |
acactttcactcataagtgtttgtgatacataattcattactcttcaataataatttccactt--------tttttcaaccattcaagtggcttaccttg |
26792159 |
T |
|
| Q |
126 |
ccatttcagcacgtttcttggcttgctctgcaatctctgaaagctcctcatagctactatactcattgatagtgttggaggtaggaggctgaagaccatg |
225 |
Q |
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| ||||| ||||||||| ||||| | |||||||| ||||||||||||| ||||||||||| ||||||| ||||| |||| ||| ||||||||||||||| |
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| T |
26792158 |
caatttcggcacgtttcctggctagatctgcaatttctgaaagctccttatagctactattttcattgaaagtgtaggagctagaaggctgaagaccatg |
26792059 |
T |
|
| Q |
226 |
gcgtgatctttgcgctgatgcccattgtgcttccctattttctctaccatagtctttctttgatgtgaaggcagtctgtaacgagaaaatatgaa-acaa |
324 |
Q |
| |
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||||||||| | ||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||| |||||||||| || || | |
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|
| T |
26792058 |
aattgatctttgtgttgatgcccattgtgcttccctctgttctctaccatagtctttctttgaagtgaaggcagtctgtaatgagaaaatataaacacga |
26791959 |
T |
|
| Q |
325 |
ttagataa-aaggnnnnnnnntgcaagtgcacgaggctatcatcaagcggagtatggacaaggtagatatgtacgcggccttatccctgcaaacagatag |
423 |
Q |
| |
|
|||||||| || | ||||||||||||||||| | ||||| ||||| ||| ||||||||| | ||| ||||||||||| ||| |||||| |
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|
| T |
26791958 |
ttagataacaaagaaaaaaaatgcaagtgcacgaggctcccgtcaagaggagttcggagaaggtagatgt---cgcagccttatccctacaagcagatat |
26791862 |
T |
|
| Q |
424 |
gttatttccaatatttgaacataagtcgacaaccttacagttgcacaaaggcttgtccttatcaacaatgtgacgaaatgataaagtgaaaagga--aaa |
521 |
Q |
| |
|
|||||||||||||||||||| || ||||||||| |||||| | |||||| |||||||||||| ||||| ||||||||||| ||||| | ||| |
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|
| T |
26791861 |
actatttccaatatttgaacat--gtgaacaaccttagagttgcgccaaggctcgtccttatcaac---gtgaccaaatgataaagcgaaaataaataaa |
26791767 |
T |
|
| Q |
522 |
taacctaccttgttttccaagatatt |
547 |
Q |
| |
|
|| |||||||||||||||| ||||| |
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|
| T |
26791766 |
aaatctaccttgttttccaaaatatt |
26791741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 305
Target Start/End: Complemental strand, 50278023 - 50277990
Alignment:
| Q |
272 |
ccatagtctttctttgatgtgaaggcagtctgta |
305 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
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|
| T |
50278023 |
ccatagtctttctttgttgtgaaggcagtctgta |
50277990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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