View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18858_low_6 (Length: 461)

Name: NF18858_low_6
Description: NF18858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18858_low_6
NF18858_low_6
[»] chr2 (18 HSPs)
chr2 (22-304)||(1895402-1895684)
chr2 (22-304)||(17281793-17282075)
chr2 (27-302)||(17375271-17375546)
chr2 (32-304)||(1551457-1551728)
chr2 (191-304)||(3921584-3921697)
chr2 (381-452)||(1895254-1895325)
chr2 (22-117)||(4140576-4140670)
chr2 (385-446)||(1551809-1551870)
chr2 (41-176)||(4869709-4869841)
chr2 (387-444)||(17282158-17282215)
chr2 (231-304)||(34660278-34660351)
chr2 (385-444)||(3921444-3921503)
chr2 (385-442)||(17375153-17375210)
chr2 (42-97)||(34660395-34660450)
chr2 (129-181)||(3921684-3921736)
chr2 (385-444)||(4869507-4869566)
chr2 (231-304)||(4869637-4869710)
chr2 (391-443)||(14950835-14950887)
[»] chr4 (18 HSPs)
chr4 (22-304)||(53202258-53202540)
chr4 (22-307)||(47518299-47518584)
chr4 (23-304)||(23054083-23054363)
chr4 (124-282)||(6410005-6410164)
chr4 (213-304)||(34227057-34227148)
chr4 (385-444)||(53202118-53202177)
chr4 (385-444)||(47518662-47518721)
chr4 (381-449)||(23054441-23054508)
chr4 (385-446)||(34227204-34227265)
chr4 (234-299)||(12469342-12469407)
chr4 (391-443)||(45873102-45873154)
chr4 (397-440)||(12489216-12489259)
chr4 (140-186)||(24957572-24957618)
chr4 (234-282)||(12466698-12466746)
chr4 (391-443)||(14441115-14441167)
chr4 (391-441)||(12130516-12130566)
chr4 (391-443)||(38093215-38093267)
chr4 (391-443)||(55728692-55728744)
[»] chr6 (5 HSPs)
chr6 (32-304)||(20740570-20740841)
chr6 (23-304)||(21881459-21881740)
chr6 (381-446)||(20740453-20740518)
chr6 (385-444)||(21881318-21881377)
chr6 (391-443)||(32747716-32747768)
[»] chr8 (8 HSPs)
chr8 (23-307)||(10408814-10409098)
chr8 (24-304)||(5994622-5994902)
chr8 (124-304)||(6444027-6444208)
chr8 (391-443)||(5994485-5994537)
chr8 (385-444)||(10408702-10408761)
chr8 (391-443)||(15050162-15050214)
chr8 (396-440)||(3763045-3763089)
chr8 (391-443)||(25142902-25142954)
[»] chr5 (25 HSPs)
chr5 (23-304)||(7766854-7767135)
chr5 (57-307)||(18696922-18697174)
chr5 (32-304)||(27169946-27170219)
chr5 (26-181)||(41355398-41355553)
chr5 (23-176)||(7271894-7272044)
chr5 (194-281)||(41355543-41355630)
chr5 (23-176)||(6030239-6030389)
chr5 (381-444)||(38958379-38958442)
chr5 (385-440)||(41355722-41355777)
chr5 (27-176)||(26656829-26656975)
chr5 (27-176)||(26928416-26928562)
chr5 (233-304)||(38958230-38958301)
chr5 (238-304)||(7271826-7271892)
chr5 (231-304)||(6030388-6030461)
chr5 (385-444)||(7271708-7271767)
chr5 (385-439)||(27170275-27170329)
chr5 (391-443)||(26331217-26331269)
chr5 (385-444)||(26656630-26656688)
chr5 (385-444)||(26928217-26928275)
chr5 (385-440)||(40599985-40600040)
chr5 (405-443)||(42221388-42221426)
chr5 (385-440)||(7767203-7767255)
chr5 (391-443)||(24867205-24867257)
chr5 (231-281)||(26656780-26656830)
chr5 (231-281)||(26928367-26928417)
[»] chr1 (16 HSPs)
chr1 (23-277)||(34117991-34118247)
chr1 (23-181)||(34655070-34655228)
chr1 (23-182)||(39708870-39709029)
chr1 (23-176)||(615825-615975)
chr1 (118-281)||(11407928-11408092)
chr1 (191-307)||(34654967-34655083)
chr1 (385-444)||(34654830-34654889)
chr1 (193-303)||(26236671-26236781)
chr1 (191-281)||(39709015-39709105)
chr1 (231-304)||(615753-615826)
chr1 (381-444)||(39709180-39709243)
chr1 (386-446)||(34117896-34117955)
chr1 (385-438)||(615638-615691)
chr1 (391-440)||(11814695-11814744)
chr1 (391-439)||(2077483-2077531)
chr1 (391-443)||(14351174-14351226)
[»] chr7 (4 HSPs)
chr7 (23-304)||(3302567-3302848)
chr7 (385-444)||(11698554-11698613)
chr7 (385-444)||(3302427-3302486)
chr7 (391-443)||(31039000-31039052)
[»] chr3 (6 HSPs)
chr3 (231-304)||(18269763-18269836)
chr3 (385-444)||(43275830-43275890)
chr3 (397-449)||(18269919-18269971)
chr3 (123-176)||(18269711-18269764)
chr3 (391-440)||(31699221-31699270)
chr3 (230-276)||(43275999-43276045)
[»] scaffold0157 (1 HSPs)
scaffold0157 (397-440)||(31218-31261)
[»] scaffold0027 (1 HSPs)
scaffold0027 (391-443)||(2938-2989)


Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 22 - 304
Target Start/End: Complemental strand, 1895684 - 1895402
Alignment:
Q  22 atttgtttcgtttggctgagacgttggtggattttgtggtgtgtcgttggatgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgattt 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||    
T  1895684 atttgtttcgtttggctgagacgttggtggattttgtggtgtgtcgttggatgcttgtcggtggttgtttggtttttgtgggtctcagactatttgattt 1895585  T
Q  122 cttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgctta 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1895584 cttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattgatcggtcatgatggtggtgatgagtcatatctaggttcgctta 1895485  T
Q  222 tgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 304  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  1895484 tgaacttatatggtttcgatggatctttggttgtgttggtttgtggtacttcatggtggttttcttggtggtattgattttgg 1895402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 22 - 304
Target Start/End: Original strand, 17281793 - 17282075
Alignment:
Q  22 atttgtttcgtttggctgagacgttggtggattttgtggtgtgtcgttggatgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgattt 121  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||  ||||||||||||| ||||||| ||| ||| ||||||||||||    
T  17281793 atttgtttcgtttggctgagacgttggtgggttttgtggtgtatcgttg-atgctttccggtggttgtttgtttttcgtaggtctcagactatttgattt 17281891  T
Q  122 cttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgctta 221  Q
     |||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||| ||||  ||||||||||||| ||||||||||||| |||||    
T  17281892 gttttctctcttggtagtggtggaggttatgtttgctcgcaacataggtggtgatggatcagtcacaatggtggtgatggatcatatctaggtttgctta 17281991  T
Q  222 tgaacttatatggtttcgatggatctttggttgtgttag-tttgtggtacttcatggtggttttcttggtggtactgattttgg 304  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||    
T  17281992 tgaacttatatggtttcgatggatctttggttgtgttggttttgtggtacttcatggtggttttcttggtggtgctgattttgg 17282075  T

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Target: chr2; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 27 - 302
Target Start/End: Complemental strand, 17375546 - 17375271
Alignment:
Q  27 tttcgtttggctgagacgttggtggattttgtggtgtgtcgttggatgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttctttt 126  Q
    |||||||||| |||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||| | ||| |||||||||||  ||||    
T  17375546 tttcgtttggttgagacgttggtgggtttcgtggtgtgtcgttggatgcctgtcggtggttgtttggttttcgtggctctcacactatttgattcgtttt 17375447  T
Q  127 ctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaac 226  Q
    |||| |||||||||||||||||||||| ||||| |||||||||||||||| ||||| ||| |||||||||||||| ||||||||||||||||||||||||    
T  17375446 ctctattggttgtggtggaggttatgtttgctcacaacataggtggtgatggatcgatcacgatggtggtgatggatcatatctaggttcgcttatgaac 17375347  T
Q  227 ttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgatttt 302  Q
    |  ||||||||||||| ||||||||||||||| ||||||||| |||||||   |||||| ||||||| ||||||||    
T  17375346 tgttatggtttcgatgaatctttggttgtgttggtttgtggtgcttcatgacagttttcatggtggtgctgatttt 17375271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 32 - 304
Target Start/End: Original strand, 1551457 - 1551728
Alignment:
Q  32 tttggctgagacgttggtggattttgtggtgtgtcgttggatgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctc 131  Q
    |||||||||||||||||||| ||||||||  |||||||||||||||| | ||  ||||||| ||||||||||| ||| |||||||||||| ||||||||     
T  1551457 tttggctgagacgttggtgggttttgtgga-tgtcgttggatgcttgcctgtaattgtttgattttcgtgggtctcagactatttgatttgttttctcta 1551555  T
Q  132 ttggttgtggtggaggttatgtctgctcgcaacataggtggtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttata 231  Q
    |||||||||||||| ||||||| |||||||||||||||||||||| |||| |||| |||||||||||||| |||| | ||||||||||||||||||||||    
T  1551556 ttggttgtggtggatgttatgtttgctcgcaacataggtggtgatggatcagtcacgatggtggtgatggatcatgtataggttcgcttatgaacttata 1551655  T
Q  232 tggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 304  Q
    | ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| || ||||||||||    
T  1551656 tagtttcgatggatctttggttgtgttggtttgtggtacttcgtggtggttttcttggtagtgctgattttgg 1551728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 191 - 304
Target Start/End: Complemental strand, 3921697 - 3921584
Alignment:
Q  191 ggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggt 290  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||| |||||||||||||||    
T  3921697 ggtggtgatggatcatatctaagttcgcttatgaacttatatggttttgatggatgtttggttgtgttggtttgtggtacttcacggtggttttcttggt 3921598  T
Q  291 ggtactgattttgg 304  Q
    ||| ||||||||||    
T  3921597 ggtgctgattttgg 3921584  T

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Target: chr2; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 381 - 452
Target Start/End: Complemental strand, 1895325 - 1895254
Alignment:
Q  381 ctgatgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatgatgatg 452  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  1895325 ctgatgttgcttttaggtgagggttaatggtgatttttgtggtgttcaatggtagttttggtgatggtgatg 1895254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 22 - 117
Target Start/End: Complemental strand, 4140670 - 4140576
Alignment:
Q  22 atttgtttcgtttggctgagacgttggtggattttgtggtgtgtcgttggatgcttgtcggtggttgtttggttttcgtgggtatcaaactatttg 117  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| |||||||| |||||||||||||||| ||| ||||||||    
T  4140670 atttgtttcgtttggctgagacgttggtgggttttgtggtgtatcgtt-gatgcttgccggtggttctttggttttcgtgggtctcagactatttg 4140576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 385 - 446
Target Start/End: Original strand, 1551809 - 1551870
Alignment:
Q  385 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatg 446  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1551809 tgttgcttttaggtgagggttaatggtgatttttgaggtggtcaatggtagttttggtgatg 1551870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 41 - 176
Target Start/End: Complemental strand, 4869841 - 4869709
Alignment:
Q  41 gacgttggtggattttgtggtgtgtcgttggatgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtg 140  Q
    ||||||||||  ||| |||||||| |||||||||||| |||||||||||||||||||   |||  |   |||||||||||  |||||||||||||||| |    
T  4869841 gacgttggtgcgtttcgtggtgtgacgttggatgcttctcggtggttgtttggttttaccggggct---actatttgattcgttttctctcttggttgcg 4869745  T
Q  141 gtggaggttatgtctgctcgcaacataggtggtgat 176  Q
    |||||||||| || || | |||||||||||||||||    
T  4869744 gtggaggttacgtttgatagcaacataggtggtgat 4869709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 387 - 444
Target Start/End: Original strand, 17282158 - 17282215
Alignment:
Q  387 ttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 444  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  17282158 ttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtaggtttggtga 17282215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 231 - 304
Target Start/End: Complemental strand, 34660351 - 34660278
Alignment:
Q  231 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 304  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||| ||||||| ||||||| ||||||||||    
T  34660351 atggtttcgatggatctttggttgtgttggtttgtggtgcttcatggcggttttcatggtggtgctgattttgg 34660278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 385 - 444
Target Start/End: Complemental strand, 3921503 - 3921444
Alignment:
Q  385 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 444  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  3921503 tgttgcttttaggtgagggttaatggtgatttttgtggtggtaaatagtagttttggtga 3921444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 385 - 442
Target Start/End: Complemental strand, 17375210 - 17375153
Alignment:
Q  385 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggt 442  Q
    |||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||    
T  17375210 tgttgctttttggtgagggttaattgtggtttttgtggtggtcaatggtagttttggt 17375153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 34660450 - 34660395
Alignment:
Q  42 acgttggtggattttgtggtgtgtcgttggatgcttgtcggtggttgtttggtttt 97  Q
    |||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||    
T  34660450 acgttggtgggtttcgtgatgtgtcgttggatgcttgtcggtggttgtttggtttt 34660395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 3921736 - 3921684
Alignment:
Q  129 ctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattgatc 181  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||| ||||    
T  3921736 ctcttggttgtggtggatgttatgtttgctcgcaacataggtggtgatggatc 3921684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 385 - 444
Target Start/End: Complemental strand, 4869566 - 4869507
Alignment:
Q  385 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 444  Q
    ||||||||||  |||| ||||||||||| |||||||||||||||||||||||||| ||||    
T  4869566 tgttgctttttagtgatggttaatggtggtttttgtggtggtcaatggtagtttttgtga 4869507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 231 - 304
Target Start/End: Complemental strand, 4869710 - 4869637
Alignment:
Q  231 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 304  Q
    ||||||| ||||||||||||||||| || ||||| ||| |||||||| ||||||| || |||| ||||||||||    
T  4869710 atggttttgatggatctttggttgttttggtttgcggtgcttcatggcggttttcatgatggtgctgattttgg 4869637  T

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Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 391 - 443
Target Start/End: Original strand, 14950835 - 14950887
Alignment:
Q  391 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 443  Q
    |||| ||||||| ||||||||| ||||||||||||| ||||||||||||||||    
T  14950835 tttttggtgaggattaatggtggtttttgtggtggttaatggtagttttggtg 14950887  T

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Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 22 - 304
Target Start/End: Complemental strand, 53202540 - 53202258
Alignment:
Q  22 atttgtttcgtttggctgagacgttggtggattttgtggtgtgtcgttggatgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgattt 121  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  53202540 atttgtttcgtttggctgagacgttggtgggttttgtggtgtgtcgttggatgcttgtctgtggttgtttggttttcgtgggtctcaaactatttgattt 53202441  T
Q  122 cttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgctta 221  Q
     ||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||| |||||||||||||  |||||||||| ||||||||    
T  53202440 gttttctctcttggttgtggtggaggttatgtttgctcgcaacataggtggtgacagatcggtcacgatggtggtgatgaatcatatctagattcgctta 53202341  T
Q  222 tgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 304  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||  |||||||||    
T  53202340 tgaacttatatggtttcgatggatctttggttgtattggtttgtggtacttcatgatggttttcttggtggtgttgattttgg 53202258  T

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Target: chr4; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 22 - 307
Target Start/End: Original strand, 47518299 - 47518584
Alignment:
Q  22 atttgtttcgtttggctgagacgttggtggattttgtggtgtgtcgttggatgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgattt 121  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||    
T  47518299 atttgtttcatttggctgagacgttggtagattttgtggtgtgtcgttggatgcttgtcggtggttgtttggttttcatgggtctcagactatttgattt 47518398  T
Q  122 cttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgctta 221  Q
     ||||||||||  ||||||||||||||||||| |||||||||||||||||||||| |||| ||||  ||||||||||||  |||||||||||||||||||    
T  47518399 gttttctctctatgttgtggtggaggttatgtttgctcgcaacataggtggtgatggatcagtcacaatggtggtgatgaatcatatctaggttcgctta 47518498  T
Q  222 tgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttggatc 307  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||    
T  47518499 tgaacttatatggtttcgatggatctttggttgtgttcgtttgtggtacttcatggtggttttcttggtgttgctgattttggatc 47518584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 23 - 304
Target Start/End: Original strand, 23054083 - 23054363
Alignment:
Q  23 tttgtttcgtttggctgagacgttggtggattttgtggtgtgtcgttggatgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttc 122  Q
    |||||||||||||| |||||||||||||| |||||||| |||| | |||||||||||| ||||||||||||||||||||||| | | ||||||||||||     
T  23054083 tttgtttcgtttggttgagacgttggtgggttttgtggcgtgttgctggatgcttgtcagtggttgtttggttttcgtgggtctgagactatttgatttg 23054182  T
Q  123 ttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttat 222  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||| |||||| ||| ||| |||||||| |||||||||||    
T  23054183 ttttctctcttggttgtggtggaggttatgtttgctcgcaacataggtggtgatggatcagtcacgatggt-gtgctggatcatatctcggttcgcttat 23054281  T
Q  223 gaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 304  Q
    |||||  ||||||||| ||||||||||||||||||| ||| ||||| ||| |||| ||||||| ||||||| ||||||||||    
T  23054282 gaactgttatggtttcaatggatctttggttgtgttggttcgtggtgctttatggcggttttcatggtggtgctgattttgg 23054363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 124 - 282
Target Start/End: Complemental strand, 6410164 - 6410005
Alignment:
Q  124 tttctctcttggttgtgg-tggaggttatgtctgctcgcaacataggtggtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttat 222  Q
    ||||||||||||| |||| |||||||||||| ||||||||| |||||||||||| ||||||||| || ||||| ||| | ||| ||||  ||||||||||    
T  6410164 tttctctcttggtggtggatggaggttatgtttgctcgcaaaataggtggtgatggatcggtcacgaaggtggcgatcgatcagatctgagttcgcttat 6410065  T
Q  223 gaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggtt 282  Q
    || ||  ||||||||||||| ||||| ||||||||| ||||||||| |||||||||||||    
T  6410064 gatctattatggtttcgatgaatcttgggttgtgttggtttgtggtgcttcatggtggtt 6410005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 213 - 304
Target Start/End: Original strand, 34227057 - 34227148
Alignment:
Q  213 gttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 304  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||| |||||||||||| ||||||||||    
T  34227057 gttcgcttatgaacttatatggtttcaatggatctttggttgtgttggtctgtggtacttcatggtggctttcttggtggtgctgattttgg 34227148  T

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Target: chr4; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 385 - 444
Target Start/End: Complemental strand, 53202177 - 53202118
Alignment:
Q  385 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 444  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53202177 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 53202118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 385 - 444
Target Start/End: Original strand, 47518662 - 47518721
Alignment:
Q  385 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 444  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  47518662 tgttgcttttaggtgagggttaatagtgatttttgtggtggtcaatggtagttttggtga 47518721  T

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Target: chr4; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 381 - 449
Target Start/End: Original strand, 23054441 - 23054508
Alignment:
Q  381 ctgatgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatgatg 449  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||    
T  23054441 ctgatgttgcttttaggtgagggttaatggtg-gttttgtggtggtcaatggtagttttggtgacgatg 23054508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 385 - 446
Target Start/End: Original strand, 34227204 - 34227265
Alignment:
Q  385 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatg 446  Q
    |||||||||||||||||||||||||||| |||| ||| ||||||||||||||||| ||||||    
T  34227204 tgttgcttttaggtgagggttaatggtggttttcgtgatggtcaatggtagttttagtgatg 34227265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 234 - 299
Target Start/End: Original strand, 12469342 - 12469407
Alignment:
Q  234 gtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgat 299  Q
    ||||||||||||| ||||||||||| ||||||||| |||||||||||||  | ||||||| |||||    
T  12469342 gtttcgatggatccttggttgtgttggtttgtggtccttcatggtggttaccatggtggtgctgat 12469407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 391 - 443
Target Start/End: Complemental strand, 45873154 - 45873102
Alignment:
Q  391 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 443  Q
    |||| ||||||| ||||||||| ||||||||||||| ||||||||||||||||    
T  45873154 tttttggtgaggattaatggtggtttttgtggtggttaatggtagttttggtg 45873102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 397 - 440
Target Start/End: Original strand, 12489216 - 12489259
Alignment:
Q  397 gtgagggttaatggtgatttttgtggtggtcaatggtagttttg 440  Q
    |||| ||||||||||||||||||||||||| |||||||||||||    
T  12489216 gtgatggttaatggtgatttttgtggtggttaatggtagttttg 12489259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 24957572 - 24957618
Alignment:
Q  140 ggtggaggttatgtctgctcgcaacataggtggtgattgatcggtca 186  Q
    |||||||||||||| ||||||||||||||||||||||  ||||||||    
T  24957572 ggtggaggttatgtttgctcgcaacataggtggtgatgtatcggtca 24957618  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 282
Target Start/End: Original strand, 12466698 - 12466746
Alignment:
Q  234 gtttcgatggatctttggttgtgttagtttgtggtacttcatggtggtt 282  Q
    ||||||||||||| |||||| |||| ||||||||| |||||||||||||    
T  12466698 gtttcgatggatccttggttatgttggtttgtggtccttcatggtggtt 12466746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 443
Target Start/End: Complemental strand, 14441167 - 14441115
Alignment:
Q  391 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 443  Q
    |||| ||||||| ||||||||| |||||||| |||| ||||||||||||||||    
T  14441167 tttttggtgaggattaatggtggtttttgtgctggttaatggtagttttggtg 14441115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 441
Target Start/End: Complemental strand, 12130566 - 12130516
Alignment:
Q  391 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttgg 441  Q
    |||| ||||||| |||||| |  ||||||||||||||||||||||||||||    
T  12130566 tttttggtgaggattaatgatagtttttgtggtggtcaatggtagttttgg 12130516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 391 - 443
Target Start/End: Complemental strand, 38093267 - 38093215
Alignment:
Q  391 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 443  Q
    |||| ||||||| || |||||| ||||||||||||| | ||||||||||||||    
T  38093267 tttttggtgaggatttatggtgttttttgtggtggttattggtagttttggtg 38093215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 391 - 443
Target Start/End: Complemental strand, 55728744 - 55728692
Alignment:
Q  391 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 443  Q
    |||| ||||||| ||||||||| ||||||||||||| |||| || ||||||||    
T  55728744 tttttggtgaggattaatggtggtttttgtggtggttaatgataattttggtg 55728692  T

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Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 32 - 304
Target Start/End: Complemental strand, 20740841 - 20740570
Alignment:
Q  32 tttggctgagacgttggtggattttgtggtgtgtcgttggatgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctc 131  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||   ||  ||||||||||||||||||| |||||||||||||||| |||||||||    
T  20740841 tttggctgagacgttggtgggttttgtgg-gtgtcgttggatgcttgcatgttattgtttggttttcgtgggtctcaaactatttgatttgttttctctc 20740743  T
Q  132 ttggttgtggtggaggttatgtctgctcgcaacataggtggtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttata 231  Q
    |||||||||||||| ||||||| |||||||||||||||||||||| ||| ||||| |||||||||||||| ||||||||||||||| |||||||||||||    
T  20740742 ttggttgtggtggatgttatgtttgctcgcaacataggtggtgatggattggtcacgatggtggtgatggatcatatctaggttcggttatgaacttata 20740643  T
Q  232 tggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 304  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||    
T  20740642 tggtttcgatggatctttggttgtgttggtttatggtacttcatggtggttttcttggtggtgctgattttgg 20740570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 23 - 304
Target Start/End: Complemental strand, 21881740 - 21881459
Alignment:
Q  23 tttgtttcgtttggctgagacgttggtggattttgtggtgtgtcgttggatgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttc 122  Q
    |||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||| |||||||||||      
T  21881740 tttgtttcgtttggttgggacattggtggattttgtggtgtgtcgttggatgcttgtcggtcgttgtttggttttcgtggctctcagactatttgattcg 21881641  T
Q  123 ttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttat 222  Q
    ||||||||||||| ||||| ||||||||||| ||||||||||| |||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||    
T  21881640 ttttctctcttggctgtggcggaggttatgtttgctcgcaacaaaggtggtgatggatcggtcacgatggtggtgatggatcatatctaggttcgcttat 21881541  T
Q  223 gaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 304  Q
    |||||  ||||||||||||| |||||||||| |||| ||||||||| ||||||||  ||| || ||||||| ||||||||||    
T  21881540 gaactgctatggtttcgatgaatctttggttatgttggtttgtggtgcttcatggcagttatcatggtggtgctgattttgg 21881459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 381 - 446
Target Start/End: Complemental strand, 20740518 - 20740453
Alignment:
Q  381 ctgatgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatg 446  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  20740518 ctgatgttgcttttaggtgaaggttaatggtgatttttgtggtggtcaatggtagttttggtgatg 20740453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 385 - 444
Target Start/End: Complemental strand, 21881377 - 21881318
Alignment:
Q  385 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 444  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  21881377 tgttgctttttggtgagggttaatcgtgatttttgtggtggtcaatgctagttttggtga 21881318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 443
Target Start/End: Original strand, 32747716 - 32747768
Alignment:
Q  391 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 443  Q
    |||| |||||||  |||||||| ||||||||||||| ||||||||||||||||    
T  32747716 tttttggtgaggtgtaatggtggtttttgtggtggttaatggtagttttggtg 32747768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 181; Significance: 1e-97; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 23 - 307
Target Start/End: Complemental strand, 10409098 - 10408814
Alignment:
Q  23 tttgtttcgtttggctgagacgttggtggattttgtggtgtgtcgttggatgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttc 122  Q
    |||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||| ||||||| ||||||||| |||||| ||||||||||||||||     
T  10409098 tttgtttcgtttggttgagacattggtgggttttgtggtgtgtcgttggatgcttgttggtggttatttggtttttgtgggtctcaaactatttgatttt 10408999  T
Q  123 ttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttat 222  Q
    || |||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||| |||||||||||||| ||||||||||||||||||||    
T  10408998 ttctctctcttggttgtggtggaggttatgtttgctcgcaacataggtggtgatggaacggtcacgatggtggtgatggatcatatctaggttcgcttat 10408899  T
Q  223 gaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttggatc 307  Q
    ||  |  ||||||||||||| ||||||||||||||| ||||||||| |||||||| ||||||  ||||||| || ||||||||||    
T  10408898 gatatgttatggtttcgatgaatctttggttgtgttggtttgtggtgcttcatggaggttttaatggtggtgctaattttggatc 10408814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 24 - 304
Target Start/End: Complemental strand, 5994902 - 5994622
Alignment:
Q  24 ttgtttcgtttggctgagacgttggtggattttgtggtgtgtcgttggatgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttct 123  Q
    ||||||||||||| || |||||||||||  |  ||||||||| |||||||| ||| ||||| ||||||||||||||||||  ||||||| |||||||| |    
T  5994902 ttgtttcgtttggttgggacgttggtggtgtacgtggtgtgttgttggatggttgccggtgattgtttggttttcgtgggcctcaaactgtttgatttgt 5994803  T
Q  124 tttctctcttggttgtgg-tggaggttatgtctgctcgcaacataggtggtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttat 222  Q
    |||||||||||||||||| |||| ||||||| |||||||||||||| || | || ||||| |||||||||||||||||| |||||||| |||||||||||    
T  5994802 tttctctcttggttgtggatggatgttatgtttgctcgcaacatag-tgctaatggatcgatcatgatggtggtgatggatcatatctgggttcgcttat 5994704  T
Q  223 gaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 304  Q
    |||||  |||||||| |||||||||||||||||||| ||||||||| |||||||| ||| ||| ||||| |  |||||||||    
T  5994703 gaactgttatggttttgatggatctttggttgtgttggtttgtggtgcttcatggcggtattcatggtgatgttgattttgg 5994622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 124 - 304
Target Start/End: Complemental strand, 6444208 - 6444027
Alignment:
Q  124 tttctctcttggttgtgg-tggaggttatgtctgctcgcaacataggtggtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttat 222  Q
    |||||||||||||||||| |||||||||||| |||||||||| |||||||| || ||| |||||  | ||||||||||| ||| || |  |||||| |||    
T  6444208 tttctctcttggttgtggatggaggttatgtttgctcgcaacttaggtggttatggattggtcacaaaggtggtgatggatcagatatgagttcgcctat 6444109  T
Q  223 gaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 304  Q
    || ||  ||||||||||| | ||||||| ||||||| |||||||||||||| ||||||||||| ||||||  ||||||||||    
T  6444108 gagctgttatggtttcgaagaatctttgattgtgttggtttgtggtacttcgtggtggttttcatggtggggctgattttgg 6444027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 391 - 443
Target Start/End: Complemental strand, 5994537 - 5994485
Alignment:
Q  391 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 443  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5994537 tttttggtgagggttaatggtgatttttgtggtggttaatggtagttttggtg 5994485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 385 - 444
Target Start/End: Complemental strand, 10408761 - 10408702
Alignment:
Q  385 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 444  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||| ||||| ||||    
T  10408761 tgttgcttttaggtgagagttaatggtggtttttgtggtggtcaatggttgttttagtga 10408702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 443
Target Start/End: Original strand, 15050162 - 15050214
Alignment:
Q  391 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 443  Q
    |||| ||||||| |||||| || ||||||||||||| ||||||||||||||||    
T  15050162 tttttggtgaggattaatgatggtttttgtggtggttaatggtagttttggtg 15050214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 440
Target Start/End: Original strand, 3763045 - 3763089
Alignment:
Q  396 ggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 440  Q
    ||||||| |||||| || ||||||||||||| |||||||||||||    
T  3763045 ggtgaggattaatgatggtttttgtggtggttaatggtagttttg 3763089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 391 - 443
Target Start/End: Complemental strand, 25142954 - 25142902
Alignment:
Q  391 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 443  Q
    |||| |||||||  || ||||||||||||||||||| |||||||||| |||||    
T  25142954 ttttcggtgaggagtagtggtgatttttgtggtggttaatggtagttgtggtg 25142902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 174; Significance: 2e-93; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 23 - 304
Target Start/End: Original strand, 7766854 - 7767135
Alignment:
Q  23 tttgtttcgtttggctgagacgttggtggattttgtggtgtgtcgttggatgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttc 122  Q
    |||||||||||||  ||||||| | |||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||     
T  7766854 tttgtttcgtttgattgagacgctagtgggtttcgtggtgtgtcgttggatgcttgccggtggttgtttggttttcgtgggtctcagactatttgatttg 7766953  T
Q  123 ttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttat 222  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||  ||||||||||||| |||||||||||||| |||||    
T  7766954 ttttctctcttggttgtgatggaggttatgtttgctcgcaacataggtggtgattgatcggccacaatggtggtgatggatcatatctaggttcacttat 7767053  T
Q  223 gaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 304  Q
    ||| |  ||||||||||||||||||||||||||||| ||||||||| |||||||| || |||| |||||||  |||||||||    
T  7767054 gaattgttatggtttcgatggatctttggttgtgttggtttgtggtgcttcatggcgggtttcatggtggtgttgattttgg 7767135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 57 - 307
Target Start/End: Complemental strand, 18697174 - 18696922
Alignment:
Q  57 gtggtgtgtcgttggatgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtg--gtggaggttatgtc 154  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||| ||| |||||||||||| |||| | | |||||||||  |||||||||||||     
T  18697174 gtggtgtgtcgttggataattgtcggtggttgtttggttttcgtgggtctcagactatttgatttgttttttatattggttgtgtggtggaggttatgtt 18697075  T
Q  155 tgctcgcaacataggtggtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttg 254  Q
    ||| |||||||||||||||||| |||| |||| |||||||||||||| |||||||||||||||||||||||||  ||||| |||| ||||||||||||||    
T  18697074 tgcccgcaacataggtggtgatggatcagtcacgatggtggtgatggatcatatctaggttcgcttatgaactgttatgggttcggtggatctttggttg 18696975  T
Q  255 tgttagtttgtggtacttcatggtggttttcttggtggtactgattttggatc 307  Q
    |||| ||||||||| |||||||| | ||||| ||||| | |||||||||||||    
T  18696974 tgttggtttgtggtgcttcatggcgtttttcatggtgttgctgattttggatc 18696922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 32 - 304
Target Start/End: Original strand, 27169946 - 27170219
Alignment:
Q  32 tttggctgagacgttggtggattttgtggtgtgtcgttggatgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttctttt-ctct 130  Q
    ||||| || ||||||||||| ||| ||||||||| | |||||||||  || |||||||||||||||||||||| |||  ||||||||||  |||| ||||    
T  27169946 tttggttgggacgttggtgggtttcgtggtgtgttgctggatgctttccgatggttgtttggttttcgtgggtctcaggctatttgattcgtttttctct 27170045  T
Q  131 cttggttgtggtggaggttatgtctgctcgcaacataggtggtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttat 230  Q
    ||||||||||||||||||||||| |||||||||| || |||||||| ||||||||| ||||||||| |||| |||||| | | ||  |||| |||||  |    
T  27170046 cttggttgtggtggaggttatgtttgctcgcaacgtaagtggtgatggatcggtcacgatggtggtaatggatcatatttggctttacttacgaactgtt 27170145  T
Q  231 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 304  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||| ||||||| ||||||| || |||||||    
T  27170146 atggtttcgatggatctttggttgtgttggtttgtggtgcttcatggcggttttcatggtggtgctaattttgg 27170219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 26 - 181
Target Start/End: Original strand, 41355398 - 41355553
Alignment:
Q  26 gtttcgtttggctgagacgttggtggattttgtggtgtgtcgttggatgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttcttt 125  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||| ||||| | | |  ||||||||||| |||    
T  41355398 gtttcatttggctgagacgttggtgggttttgtggtgtgtcgttggatgcttgccggtggttgtttagtttccgtggatcttaggctatttgatttgttt 41355497  T
Q  126 tctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattgatc 181  Q
    |||||||||||||||||||||||||| | ||||||||||||||| |||||| ||||    
T  41355498 tctctcttggttgtggtggaggttatatttgctcgcaacataggcggtgatggatc 41355553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 23 - 176
Target Start/End: Complemental strand, 7272044 - 7271894
Alignment:
Q  23 tttgtttcgtttggctgagacgttggtggattttgtggtgtgtcgttggatgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttc 122  Q
    ||||||||| |||| |  ||||||||||| |||  |  |||||||||||||||||||| ||||||||||||||||  ||||  |   |||||||||||      
T  7272044 tttgtttcgcttggtttggacgttggtgggtttctttatgtgtcgttggatgcttgtcagtggttgtttggttttattggggct---actatttgattcg 7271948  T
Q  123 ttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgat 176  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7271947 ttttctctcttggttgtggtggaggttatgtttgctcgcaacataggtggtgat 7271894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 194 - 281
Target Start/End: Original strand, 41355543 - 41355630
Alignment:
Q  194 ggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggt 281  Q
    |||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  41355543 ggtgatggatcatatctatgttcgctcatgaacttatatggtttcgatggatctttggttgtgttggtttgtggtacttcatggtggt 41355630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 23 - 176
Target Start/End: Original strand, 6030239 - 6030389
Alignment:
Q  23 tttgtttcgtttggctgagacgttggtggattttgtggtgtgtcgttggatgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttc 122  Q
    |||| |||| |||| || ||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||  |||   |   |||||||||||      
T  6030239 tttggttcgcttggttgggacgttggtgggtttcgtggtgtgtcgttggatgcttctcggtggttgtttggttttattggaact---actatttgattcg 6030335  T
Q  123 ttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgat 176  Q
    |||||||||||||||| |||||| ||||||| || ||| |||||||||||||||    
T  6030336 ttttctctcttggttgcggtggatgttatgtttgatcggaacataggtggtgat 6030389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 381 - 444
Target Start/End: Original strand, 38958379 - 38958442
Alignment:
Q  381 ctgatgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 444  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38958379 ctgacgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 38958442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 385 - 440
Target Start/End: Original strand, 41355722 - 41355777
Alignment:
Q  385 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 440  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41355722 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 41355777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 27 - 176
Target Start/End: Complemental strand, 26656975 - 26656829
Alignment:
Q  27 tttcgtttggctgagacgttggtggattttgtggtgtgtcgttggatgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttctttt 126  Q
    |||||||||| || ||| ||||||| ||   || ||||||||||||||||||||||| |||||||| ||||  ||||  |   |||||||||||  ||||    
T  26656975 tttcgtttggttgggacattggtgggttccttgatgtgtcgttggatgcttgtcggttgttgtttgattttattggggct---actatttgattcgtttt 26656879  T
Q  127 ctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgat 176  Q
    ||||||||||||| ||| ||||||||| ||||||||| ||| ||||||||    
T  26656878 ctctcttggttgttgtgaaggttatgtttgctcgcaatataagtggtgat 26656829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 27 - 176
Target Start/End: Complemental strand, 26928562 - 26928416
Alignment:
Q  27 tttcgtttggctgagacgttggtggattttgtggtgtgtcgttggatgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttctttt 126  Q
    |||||||||| || ||| ||||||| ||   || ||||||||||||||||||||||| |||||||| ||||  ||||  |   |||||||||||  ||||    
T  26928562 tttcgtttggttgggacattggtgggttccttgatgtgtcgttggatgcttgtcggttgttgtttgattttattggggct---actatttgattcgtttt 26928466  T
Q  127 ctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgat 176  Q
    ||||||||||||| ||| ||||||||| ||||||||| ||| ||||||||    
T  26928465 ctctcttggttgttgtgaaggttatgtttgctcgcaatataagtggtgat 26928416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 233 - 304
Target Start/End: Original strand, 38958230 - 38958301
Alignment:
Q  233 ggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 304  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||| |||| ||||||||||    
T  38958230 ggtttcgatggatctttggttgtgttggtttgtgatacttcatggtggtttttttgatggtgctgattttgg 38958301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 238 - 304
Target Start/End: Complemental strand, 7271892 - 7271826
Alignment:
Q  238 cgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 304  Q
    ||||||||||||||||||||| ||||||||| |||||||| ||||||| ||||||| ||||||||||    
T  7271892 cgatggatctttggttgtgttggtttgtggtgcttcatggcggttttcatggtggtgctgattttgg 7271826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 231 - 304
Target Start/End: Original strand, 6030388 - 6030461
Alignment:
Q  231 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 304  Q
    |||||||||||||||||||||||||||| ||||||||| |||| ||  ||||||| ||||||| ||||||||||    
T  6030388 atggtttcgatggatctttggttgtgttggtttgtggtgcttcctgacggttttcatggtggtgctgattttgg 6030461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 385 - 444
Target Start/End: Complemental strand, 7271767 - 7271708
Alignment:
Q  385 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 444  Q
    ||||||||||  |||| ||||||||||| ||||||||||||||||||||| |||||||||    
T  7271767 tgttgctttttagtgatggttaatggtggtttttgtggtggtcaatggtacttttggtga 7271708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 385 - 439
Target Start/End: Original strand, 27170275 - 27170329
Alignment:
Q  385 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagtttt 439  Q
    |||||||||| ||||||| ||||||||| ||||||||||||| ||||||||||||    
T  27170275 tgttgctttttggtgaggattaatggtggtttttgtggtggttaatggtagtttt 27170329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 391 - 443
Target Start/End: Original strand, 26331217 - 26331269
Alignment:
Q  391 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 443  Q
    |||| ||||||| ||||||||| ||||||||||||| ||||||||||||||||    
T  26331217 tttttggtgaggattaatggtggtttttgtggtggttaatggtagttttggtg 26331269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 385 - 444
Target Start/End: Complemental strand, 26656688 - 26656630
Alignment:
Q  385 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 444  Q
    ||||||||||  |||| ||||||||||| |||| ||||||||||||||||||||||||||    
T  26656688 tgttgctttttagtgatggttaatggtggtttt-gtggtggtcaatggtagttttggtga 26656630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 385 - 444
Target Start/End: Complemental strand, 26928275 - 26928217
Alignment:
Q  385 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 444  Q
    ||||||||||  |||| ||||||||||| |||| ||||||||||||||||||||||||||    
T  26928275 tgttgctttttagtgatggttaatggtggtttt-gtggtggtcaatggtagttttggtga 26928217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 385 - 440
Target Start/End: Original strand, 40599985 - 40600040
Alignment:
Q  385 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 440  Q
    ||||| |||| ||||||| ||||||||| ||||||||||||| |||||||||||||    
T  40599985 tgttgatttttggtgaggattaatggtggtttttgtggtggttaatggtagttttg 40600040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 405 - 443
Target Start/End: Complemental strand, 42221426 - 42221388
Alignment:
Q  405 taatggtgatttttgtggtggtcaatggtagttttggtg 443  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  42221426 taatggtgatttttgtggtggttaatggtagttttggtg 42221388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 385 - 440
Target Start/End: Original strand, 7767203 - 7767255
Alignment:
Q  385 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 440  Q
    |||||||||||||||||||||   |||| |||||||||||||||||| ||||||||    
T  7767203 tgttgcttttaggtgagggtt---ggtggtttttgtggtggtcaatgatagttttg 7767255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 443
Target Start/End: Original strand, 24867205 - 24867257
Alignment:
Q  391 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 443  Q
    |||| ||||||| ||||||||| |||||||| |||| ||||||||||||||||    
T  24867205 tttttggtgaggattaatggtggtttttgtgttggttaatggtagttttggtg 24867257  T

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Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 281
Target Start/End: Complemental strand, 26656830 - 26656780
Alignment:
Q  231 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggt 281  Q
    |||||||||| |||||||||||||| || |||| |||| ||||||||||||    
T  26656830 atggtttcgacggatctttggttgtattggtttatggtgcttcatggtggt 26656780  T

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Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 281
Target Start/End: Complemental strand, 26928417 - 26928367
Alignment:
Q  231 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggt 281  Q
    |||||||||| |||||||||||||| || |||| |||| ||||||||||||    
T  26928417 atggtttcgacggatctttggttgtattggtttatggtgcttcatggtggt 26928367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 138; Significance: 6e-72; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 23 - 277
Target Start/End: Complemental strand, 34118247 - 34117991
Alignment:
Q  23 tttgtttcgtttggctgagacgttggtggattttgtggtgtgtcgttggatgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttc 122  Q
    ||||||| ||||||  ||||||||||||| |||  ||||||||||||||||||||| |||||||||||| |||||||||| | ||| | ||||||||||     
T  34118247 tttgttttgtttggtcgagacgttggtgggtttcatggtgtgtcgttggatgcttgccggtggttgtttagttttcgtggatctcagattatttgatttg 34118148  T
Q  123 ttttctctcttggttgtg--gtggaggttatgtctgctcgcaacataggtggtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgctt 220  Q
    |||||||| |||||||||  || |||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||    
T  34118147 ttttctctattggttgtgtggtagaggttatgtttgctcgcaacataggtggtgatggatcggtcacgatggtggtgatggatcatatctaggttcgctt 34118048  T
Q  221 atgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatgg 277  Q
    |||||||  |||||||||  ||||||||||||||||||  |||||||| | ||||||    
T  34118047 atgaactgttatggtttcagtggatctttggttgtgttgatttgtggtgcctcatgg 34117991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 23 - 181
Target Start/End: Complemental strand, 34655228 - 34655070
Alignment:
Q  23 tttgtttcgtttggctgagacgttggtggattttgtggtgtgtcgttggatgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttc 122  Q
    |||||||||||| | ||||| |||||| | ||| |||||||||||||||||||||  ||||| ||||||||||||||||||| ||| ||||||||||||     
T  34655228 tttgtttcgtttagttgagatgttggttggtttcgtggtgtgtcgttggatgctttccggtgtttgtttggttttcgtgggtctcagactatttgatttg 34655129  T
Q  123 ttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattgatc 181  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  34655128 ttttctcttttggttgtggtggaggttatgtttgctcgcaacataggtggtgatggatc 34655070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 23 - 182
Target Start/End: Original strand, 39708870 - 39709029
Alignment:
Q  23 tttgtttcgtttggctgagacgttggtggatttt-gtggtgtgtcgttggatgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgattt 121  Q
    ||||||| |||||| |  ||||||||||| |||| ||||||||| ||| |||||||||||||||||||||||||||| ||||| || ||||||||||||     
T  39708870 tttgttttgtttggttaggacgttggtgggtttttgtggtgtgttgttagatgcttgtcggtggttgtttggttttc-tgggtctcgaactatttgattc 39708968  T
Q  122 cttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattgatcg 182  Q
     ||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||    
T  39708969 gttttctctcttggttgtggtggaggttatgtttgctcgcaatataggtggtgatggatcg 39709029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 23 - 176
Target Start/End: Complemental strand, 615975 - 615825
Alignment:
Q  23 tttgtttcgtttggctgagacgttggtggattttgtggtgtgtcgttggatgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttc 122  Q
    ||||||||| |||| || ||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||  |||   |   |||||||||||      
T  615975 tttgtttcgcttggttgggacgttggtgggtttcgtggtgtgtcgttggatgcttctcggtggttgtttggttttattggagct---actatttgattcg 615879  T
Q  123 ttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgat 176  Q
    |||||||||||||||||||||||| |||||| || |||||||||||||||||||    
T  615878 ttttctctcttggttgtggtggagattatgtttgatcgcaacataggtggtgat 615825  T

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Target: chr1; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 118 - 281
Target Start/End: Original strand, 11407928 - 11408092
Alignment:
Q  118 atttcttttctctcttggttgtgg-tggaggttatgtctgctcgcaacataggtggtgattgatcggtcatgatggtggtgatgggtcatatctaggttc 216  Q
    |||| |||||||||||||| |||| |||||||||||| ||||||||||||| |||||||| |||||| || || ||||||||||| ||| || | ||||     
T  11407928 atttgttttctctcttggtggtgggtggaggttatgtttgctcgcaacataagtggtgatggatcggccacgaaggtggtgatggatcagatatgggtta 11408027  T
Q  217 gcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggt 281  Q
    ||||||||  |  |||||||||||   ||||||||||||||| ||||||||| ||||||||||||    
T  11408028 gcttatgatatgttatggtttcgacaaatctttggttgtgttggtttgtggtgcttcatggtggt 11408092  T

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Target: chr1; HSP #6
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 191 - 307
Target Start/End: Complemental strand, 34655083 - 34654967
Alignment:
Q  191 ggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggt 290  Q
    ||||||||||| ||||||||||||||||||||||| |  |||||||| |||| ||||||| ||||||| ||||||||| |||||||| ||||||| ||||    
T  34655083 ggtggtgatggatcatatctaggttcgcttatgaaatgttatggttttgatgcatctttgattgtgttggtttgtggtgcttcatggcggttttcatggt 34654984  T
Q  291 ggtactgattttggatc 307  Q
    ||| |||||||||||||    
T  34654983 ggtgctgattttggatc 34654967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 385 - 444
Target Start/End: Complemental strand, 34654889 - 34654830
Alignment:
Q  385 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 444  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34654889 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 34654830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 193 - 303
Target Start/End: Original strand, 26236671 - 26236781
Alignment:
Q  193 tggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtgg 292  Q
    ||||||||| ||| |||| ||||| ||||||| ||  ||||| ||||||||||||||||||| ||| ||||||||| |||||||||||||||| || |||    
T  26236671 tggtgatggatcagatctgggttcacttatgacctgttatgggttcgatggatctttggttgcgttggtttgtggtgcttcatggtggttttcatgatgg 26236770  T
Q  293 tactgattttg 303  Q
    | |||||||||    
T  26236771 tgctgattttg 26236781  T

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Target: chr1; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 191 - 281
Target Start/End: Original strand, 39709015 - 39709105
Alignment:
Q  191 ggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggt 281  Q
    ||||||||||| || ||||| |||||||||| |||||  |||||||| |||||||||||||||||||| ||||||||| ||||||||||||    
T  39709015 ggtggtgatggatcgtatctgggttcgcttaggaactgttatggttttgatggatctttggttgtgttggtttgtggtgcttcatggtggt 39709105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 231 - 304
Target Start/End: Complemental strand, 615826 - 615753
Alignment:
Q  231 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 304  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||  ||||||| ||||||| |||| |||||    
T  615826 atggttttgatggatctttggttgtgttagtttgtggtgcttcatgacggttttcatggtggtgctgaatttgg 615753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 381 - 444
Target Start/End: Original strand, 39709180 - 39709243
Alignment:
Q  381 ctgatgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 444  Q
    ||||| || ||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  39709180 ctgatatttctttttggtgagggttaatggtgatttttgtggtggttaatggtagttttcgtga 39709243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 386 - 446
Target Start/End: Complemental strand, 34117955 - 34117896
Alignment:
Q  386 gttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatg 446  Q
    ||||||||| ||||||||||||||||| ||||||| | |||||||||||||||||||||||    
T  34117955 gttgctttt-ggtgagggttaatggtggtttttgtagcggtcaatggtagttttggtgatg 34117896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 438
Target Start/End: Complemental strand, 615691 - 615638
Alignment:
Q  385 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttt 438  Q
    ||||||||||  |||| |||||||||||  |||||||| |||||||||||||||    
T  615691 tgttgctttttagtgatggttaatggtgccttttgtggcggtcaatggtagttt 615638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 440
Target Start/End: Complemental strand, 11814744 - 11814695
Alignment:
Q  391 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 440  Q
    |||| ||||||| ||||||||| |||||||| |||| |||||||||||||    
T  11814744 tttttggtgaggattaatggtggtttttgtgatggttaatggtagttttg 11814695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 391 - 439
Target Start/End: Original strand, 2077483 - 2077531
Alignment:
Q  391 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagtttt 439  Q
    |||| ||||||| ||||||||| ||||||||||||| |||| |||||||    
T  2077483 tttttggtgaggattaatggtggtttttgtggtggttaatgatagtttt 2077531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 391 - 443
Target Start/End: Original strand, 14351174 - 14351226
Alignment:
Q  391 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 443  Q
    |||| ||||||  ||||||||| ||||||||||||| | ||||||||||||||    
T  14351174 tttttggtgagaattaatggtggtttttgtggtggttagtggtagttttggtg 14351226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 134; Significance: 1e-69; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 23 - 304
Target Start/End: Complemental strand, 3302848 - 3302567
Alignment:
Q  23 tttgtttcgtttggctgagacgttggtggattttgtggtgtgtcgttggatgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttc 122  Q
    |||||||||||||| || ||||||| ||| ||| |||||||||| ||||||||||   |||||||||||||||||||||| | ||| |||||||||||      
T  3302848 tttgtttcgtttggttgtgacgttgctgggtttcgtggtgtgtcattggatgcttagtggtggttgtttggttttcgtggatctcagactatttgattca 3302749  T
Q  123 ttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttat 222  Q
    ||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||| ||||||||||||   |||||||||| |||||||||    
T  3302748 tttcctctcttggttgtggtggaggttatgtttgctcgcaacataggtggtgatagatcgatcacgatggtggtgatacatcatatctagattcgcttat 3302649  T
Q  223 gaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 304  Q
     ||||  ||| |||||||||||||||||||||| || || |||||| |||||||   |||||| |||||||  |||||||||    
T  3302648 taactgttatagtttcgatggatctttggttgtattggtatgtggtgcttcatgacagttttcatggtggtgttgattttgg 3302567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 385 - 444
Target Start/End: Original strand, 11698554 - 11698613
Alignment:
Q  385 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 444  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11698554 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 11698613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 385 - 444
Target Start/End: Complemental strand, 3302486 - 3302427
Alignment:
Q  385 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 444  Q
    |||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||    
T  3302486 tgttgctttttggtgagtgttaatggtggtttttgtggtggtcaatggtagttttggtga 3302427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 443
Target Start/End: Complemental strand, 31039052 - 31039000
Alignment:
Q  391 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 443  Q
    |||| |||||||  |||||||| ||||||||||||| ||||||||||||||||    
T  31039052 ttttcggtgaggagtaatggtggtttttgtggtggttaatggtagttttggtg 31039000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 8e-22; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 231 - 304
Target Start/End: Original strand, 18269763 - 18269836
Alignment:
Q  231 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 304  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||  |||||||||    
T  18269763 atggtttcgatggatctttggttgtgttggtttgtggtgcttcatggtggttttcatggtggtgttgattttgg 18269836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 385 - 444
Target Start/End: Complemental strand, 43275890 - 43275830
Alignment:
Q  385 tgttgcttttaggtgagggttaatggtgattttt-gtggtggtcaatggtagttttggtga 444  Q
    |||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  43275890 tgttgctttttggtgagggttaatggtggttttttgtggtggtcaatggtagttttggtga 43275830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 397 - 449
Target Start/End: Original strand, 18269919 - 18269971
Alignment:
Q  397 gtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatgatg 449  Q
    |||| ||||||||||| ||||||||||||||||||| ||||||||||| ||||    
T  18269919 gtgatggttaatggtggtttttgtggtggtcaatggaagttttggtgacgatg 18269971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 123 - 176
Target Start/End: Original strand, 18269711 - 18269764
Alignment:
Q  123 ttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgat 176  Q
    |||||||||||| || || ||||||||||||||| ||| |||||||||||||||    
T  18269711 ttttctctcttgattatgatggaggttatgtctgatcgaaacataggtggtgat 18269764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 391 - 440
Target Start/End: Complemental strand, 31699270 - 31699221
Alignment:
Q  391 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 440  Q
    |||| ||||||| ||||||||| ||||||||||||| |||||||||||||    
T  31699270 tttttggtgaggattaatggtggtttttgtggtggttaatggtagttttg 31699221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 276
Target Start/End: Complemental strand, 43276045 - 43275999
Alignment:
Q  230 tatggtttcgatggatctttggttgtgttagtttgtggtacttcatg 276  Q
    |||| |||||||| ||||||||||||||| ||||||||| |||||||    
T  43276045 tatgatttcgatgaatctttggttgtgttggtttgtggtgcttcatg 43275999  T

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Target: scaffold0157 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 397 - 440
Target Start/End: Complemental strand, 31261 - 31218
Alignment:
Q  397 gtgagggttaatggtgatttttgtggtggtcaatggtagttttg 440  Q
    |||| ||||||||||||||||||||||||| |||||||||||||    
T  31261 gtgatggttaatggtgatttttgtggtggttaatggtagttttg 31218  T

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Target: scaffold0027 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 391 - 443
Target Start/End: Complemental strand, 2989 - 2938
Alignment:
Q  391 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 443  Q
    |||| |||||||  ||||||||||||| |||||||| ||||||||||||||||    
T  2989 tttttggtgaggagtaatggtgatttt-gtggtggttaatggtagttttggtg 2938  T

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