View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18858_low_7 (Length: 409)

Name: NF18858_low_7
Description: NF18858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18858_low_7
NF18858_low_7
[»] chr7 (8 HSPs)
chr7 (19-319)||(23080942-23081240)
chr7 (16-293)||(23091864-23092142)
chr7 (112-224)||(23026445-23026557)
chr7 (112-224)||(23035249-23035361)
chr7 (100-264)||(23069080-23069244)
chr7 (351-392)||(21225725-21225766)
chr7 (351-392)||(48176140-48176181)
chr7 (340-392)||(26126329-26126380)
[»] chr3 (8 HSPs)
chr3 (91-167)||(30798661-30798737)
chr3 (97-158)||(30706209-30706270)
chr3 (103-160)||(30790311-30790368)
chr3 (349-392)||(3780962-3781005)
chr3 (104-143)||(30699381-30699420)
chr3 (97-143)||(30719192-30719238)
chr3 (349-389)||(23320444-23320484)
chr3 (91-167)||(30868431-30868506)
[»] chr6 (1 HSPs)
chr6 (347-392)||(4370979-4371024)
[»] chr5 (2 HSPs)
chr5 (351-392)||(38408714-38408755)
chr5 (351-392)||(36641228-36641270)
[»] chr1 (3 HSPs)
chr1 (351-392)||(29182178-29182219)
chr1 (351-392)||(24196346-24196388)
chr1 (349-389)||(22786113-22786153)
[»] chr8 (4 HSPs)
chr8 (351-392)||(12723438-12723480)
chr8 (349-390)||(1824688-1824729)
chr8 (349-390)||(1859133-1859174)
chr8 (351-384)||(15869523-15869556)
[»] scaffold0025 (1 HSPs)
scaffold0025 (351-392)||(19368-19409)
[»] chr4 (1 HSPs)
chr4 (351-392)||(1588590-1588631)


Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 19 - 319
Target Start/End: Complemental strand, 23081240 - 23080942
Alignment:
Q  19 atatgaagatatataattaaattacctttagaggctgcatagacagaagcaaaaggccgggctttgaatcctgcaattgaggatatgaatacaatgcttc 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  23081240 atatgaagatatataattaaattacctttagaggctgcatagacagaagcaaaaggccaggctttgagtcctgcaattgaggatatgaatacaatgcttc 23081141  T
Q  119 catttccagattgttttagaagagggtgtgcaagttgacacaaatgataaccagacacaaaattggtaccaattgtagttgttatatcttcatcagtatt 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  23081140 catttccagattgttttagaagagggtgtgcaagttgacacaaatgataaccagacacaaaattggtaccaattgtagttgttatatcttcatcagtata 23081041  T
Q  219 atctatgatgagtttaggagtaaatgtcccagcattgtttacctaacagtttgagaaattcactcatcaaataaatatatacataatcaatataattaac 318  Q
    ||| |||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||    
T  23081040 atccatgatgggtttaggagtaaatattccagcattgtttacctaacagtttgagaaattcactcatcaaataaa--tatacataatcaatataatgaac 23080943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 16 - 293
Target Start/End: Complemental strand, 23092142 - 23091864
Alignment:
Q  16 ataatatgaagatatataattaaa-ttacctttagaggctgcatagacagaagcaaaaggccgggctttgaatcctgcaattgaggatatgaatacaatg 114  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||  ||||||||  |||| ||||||||||||| |||| |||    
T  23092142 ataatatgaagatatataattaaaattacctttagaggctgcatagacagaaacaaaaggcaaggctttgagacctgaaattgaggatatgtatactatg 23092043  T
Q  115 cttccatttccagattgttttagaagagggtgtgcaagttgacacaaatgataaccagacacaaaattggtaccaattgtagttgttatatcttcatcag 214  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||| || ||||||||||||||    
T  23092042 cttccatatccagattgttttagaagaggatgtgcaagttgacacaaatggtaactagacacaaaattggtaccaattgtagatgctatatcttcatcag 23091943  T
Q  215 tattatctatgatgagtttaggagtaaatgtcccagcattgtttacctaacagtttgagaaattcactcatcaaataaa 293  Q
    ||| ||| |||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||    
T  23091942 tataatccatgatgggtttaggagtaaatattccagcattgtttacctaacagtttgagaaattcactcatcaattaaa 23091864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 112 - 224
Target Start/End: Complemental strand, 23026557 - 23026445
Alignment:
Q  112 atgcttccatttccagattgttttagaagagggtgtgcaagttgacacaaatgataaccagacacaaaattggtaccaattgtagttgttatatcttcat 211  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| | ||||||  ||||||||||||    
T  23026557 atgcttccatatccagattgttttagaagaggatgtgcaagttgacacaaatggtaaccagacacaaaatttgtacccaatgtagtgtttatatcttcat 23026458  T
Q  212 cagtattatctat 224  Q
    |||||||||||||    
T  23026457 cagtattatctat 23026445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 112 - 224
Target Start/End: Complemental strand, 23035361 - 23035249
Alignment:
Q  112 atgcttccatttccagattgttttagaagagggtgtgcaagttgacacaaatgataaccagacacaaaattggtaccaattgtagttgttatatcttcat 211  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| | ||||||  ||||||||||||    
T  23035361 atgcttccatatccagattgttttagaagaggatgtgcaagttgacacaaatggtaaccagacacaaaatttgtacccaatgtagtgtttatatcttcat 23035262  T
Q  212 cagtattatctat 224  Q
    |||||||||||||    
T  23035261 cagtattatctat 23035249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 100 - 264
Target Start/End: Complemental strand, 23069244 - 23069080
Alignment:
Q  100 gatatgaatacaatgcttccatttccagattgttttagaagagggtgtgcaagttgacacaaatgataaccagacacaaaattggtaccaattgtagttg 199  Q
    |||||| |||||||||| |||| |||||||| ||||| ||| ||||||||||||||||||||||| |||| |||  |||| ||  |||| |||||| |||    
T  23069244 gatatggatacaatgctcccatatccagattcttttaaaagtgggtgtgcaagttgacacaaatggtaactagattcaaagttaatacccattgtatttg 23069145  T
Q  200 ttatatcttcatcagtattatctatgatgagtttaggagtaaatgtcccagcattgtttacctaa 264  Q
    | | ||||||| ||||||  ||||  ||    |||||||||| |||||||||||| || ||||||    
T  23069144 tcacatcttcagcagtatgttctagcattgtcttaggagtaattgtcccagcattattcacctaa 23069080  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 392
Target Start/End: Complemental strand, 21225766 - 21225725
Alignment:
Q  351 atgtttagagaaatatgctcctttgacctctaacataaggga 392  Q
    |||||||| ||||||||||| ||||||| |||||||||||||    
T  21225766 atgtttagggaaatatgctcttttgacccctaacataaggga 21225725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 392
Target Start/End: Complemental strand, 48176181 - 48176140
Alignment:
Q  351 atgtttagagaaatatgctcctttgacctctaacataaggga 392  Q
    |||||||| ||||||||||| ||||||| |||||||||||||    
T  48176181 atgtttagggaaatatgctcttttgacccctaacataaggga 48176140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 392
Target Start/End: Original strand, 26126329 - 26126380
Alignment:
Q  340 tttggctctccatgtttagagaaatatgctcctttgacctctaacataaggga 392  Q
    |||||||| |||||||||| ||||||||||  ||||||| |||||||||||||    
T  26126329 tttggctc-ccatgtttagggaaatatgcttttttgacccctaacataaggga 26126380  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 91 - 167
Target Start/End: Complemental strand, 30798737 - 30798661
Alignment:
Q  91 gcaattgaggatatgaatacaatgcttccatttccagattgttttagaagagggtgtgcaagttgacacaaatgata 167  Q
    ||||| ||||| |||||||||||||||||  ||||| ||   ||||||||||| |||| ||||||||||||||||||    
T  30798737 gcaatagaggaaatgaatacaatgcttcccattccatatgcctttagaagaggatgtgtaagttgacacaaatgata 30798661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 97 - 158
Target Start/End: Original strand, 30706209 - 30706270
Alignment:
Q  97 gaggatatgaatacaatgcttccatttccagattgttttagaagagggtgtgcaagttgaca 158  Q
    ||||| ||||| |||||||||||||||||||||| ||| |||||||| | ||| ||||||||    
T  30706209 gaggaaatgaacacaatgcttccatttccagattctttaagaagaggatatgctagttgaca 30706270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 103 - 160
Target Start/End: Complemental strand, 30790368 - 30790311
Alignment:
Q  103 atgaatacaatgcttccatttccagattgttttagaagagggtgtgcaagttgacaca 160  Q
    ||||| |||||||| ||||||||||||| |||||||||||| |||| |||||| ||||    
T  30790368 atgaacacaatgctaccatttccagattcttttagaagaggatgtgaaagttggcaca 30790311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 349 - 392
Target Start/End: Original strand, 3780962 - 3781005
Alignment:
Q  349 ccatgtttagagaaatatgctcctttgacctctaacataaggga 392  Q
    |||||||||| ||||||||||| ||||||| |||||||||||||    
T  3780962 ccatgtttagggaaatatgctcttttgacccctaacataaggga 3781005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 104 - 143
Target Start/End: Original strand, 30699381 - 30699420
Alignment:
Q  104 tgaatacaatgcttccatttccagattgttttagaagagg 143  Q
    ||||||||||||||||||||||||||| ||| ||||||||    
T  30699381 tgaatacaatgcttccatttccagattctttaagaagagg 30699420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 143
Target Start/End: Original strand, 30719192 - 30719238
Alignment:
Q  97 gaggatatgaatacaatgcttccatttccagattgttttagaagagg 143  Q
    ||||| ||||| |||||||||||||||||||||| ||| ||||||||    
T  30719192 gaggaaatgaaaacaatgcttccatttccagattctttaagaagagg 30719238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 389
Target Start/End: Original strand, 23320444 - 23320484
Alignment:
Q  349 ccatgtttagagaaatatgctcctttgacctctaacataag 389  Q
    |||||||||| ||||||||||| ||||||| ||||||||||    
T  23320444 ccatgtttagggaaatatgctcttttgacccctaacataag 23320484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 91 - 167
Target Start/End: Original strand, 30868431 - 30868506
Alignment:
Q  91 gcaattgaggatatgaatacaatgcttccatttccagattgttttagaagagggtgtgcaagttgacacaaatgata 167  Q
    ||||| ||||| |||||||||||||||||  ||||||||   ||||||||||| | || |||||| |||||||||||    
T  30868431 gcaatagaggaaatgaatacaatgcttcccattccagatgtctttagaagaggat-tgtaagttggcacaaatgata 30868506  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 347 - 392
Target Start/End: Original strand, 4370979 - 4371024
Alignment:
Q  347 ctccatgtttagagaaatatgctcctttgacctctaacataaggga 392  Q
    |||||||||||| ||||||||||| ||||||| |||||||||||||    
T  4370979 ctccatgtttagggaaatatgctcttttgacccctaacataaggga 4371024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 351 - 392
Target Start/End: Original strand, 38408714 - 38408755
Alignment:
Q  351 atgtttagagaaatatgctcctttgacctctaacataaggga 392  Q
    |||||||||||||||||||| ||||||| |||||||||||||    
T  38408714 atgtttagagaaatatgctcttttgaccactaacataaggga 38408755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 392
Target Start/End: Original strand, 36641228 - 36641270
Alignment:
Q  351 atgtttagagaaatatgctcctttgacct-ctaacataaggga 392  Q
    |||||||||||||||||||| |||||||| |||||||||||||    
T  36641228 atgtttagagaaatatgctcttttgacctcctaacataaggga 36641270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 351 - 392
Target Start/End: Complemental strand, 29182219 - 29182178
Alignment:
Q  351 atgtttagagaaatatgctcctttgacctctaacataaggga 392  Q
    |||||||||||||||||||| ||||||| |||||||||||||    
T  29182219 atgtttagagaaatatgctcttttgacccctaacataaggga 29182178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 392
Target Start/End: Original strand, 24196346 - 24196388
Alignment:
Q  351 atgtttagagaaatatgctcctttgacct-ctaacataaggga 392  Q
    |||||||||||||||||||| |||||||| |||||||||||||    
T  24196346 atgtttagagaaatatgctcttttgacctcctaacataaggga 24196388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 389
Target Start/End: Original strand, 22786113 - 22786153
Alignment:
Q  349 ccatgtttagagaaatatgctcctttgacctctaacataag 389  Q
    |||||||||| ||||||||||| |||||| |||||||||||    
T  22786113 ccatgtttagggaaatatgctcttttgacatctaacataag 22786153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 392
Target Start/End: Complemental strand, 12723480 - 12723438
Alignment:
Q  351 atgtttagagaaatatgctcctttgacct-ctaacataaggga 392  Q
    |||||||||||||||||||| |||||||| |||||||||||||    
T  12723480 atgtttagagaaatatgctcttttgacctcctaacataaggga 12723438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 390
Target Start/End: Original strand, 1824688 - 1824729
Alignment:
Q  349 ccatgtttagagaaatatgctcctttgacctctaacataagg 390  Q
    |||||||||| ||||||||||| ||||||| |||||||||||    
T  1824688 ccatgtttagggaaatatgctcttttgacccctaacataagg 1824729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 390
Target Start/End: Original strand, 1859133 - 1859174
Alignment:
Q  349 ccatgtttagagaaatatgctcctttgacctctaacataagg 390  Q
    |||||||||| ||||||||||| ||||||| |||||||||||    
T  1859133 ccatgtttagggaaatatgctcttttgacccctaacataagg 1859174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 384
Target Start/End: Complemental strand, 15869556 - 15869523
Alignment:
Q  351 atgtttagagaaatatgctcctttgacctctaac 384  Q
    |||||||||||||||||||| |||||||||||||    
T  15869556 atgtttagagaaatatgctcttttgacctctaac 15869523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 392
Target Start/End: Original strand, 19368 - 19409
Alignment:
Q  351 atgtttagagaaatatgctcctttgacctctaacataaggga 392  Q
    |||||||| ||||||||||| ||||||| |||||||||||||    
T  19368 atgtttagggaaatatgctcttttgacccctaacataaggga 19409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 392
Target Start/End: Complemental strand, 1588631 - 1588590
Alignment:
Q  351 atgtttagagaaatatgctcctttgacctctaacataaggga 392  Q
    |||||||| ||||||||||| ||||||| |||||||||||||    
T  1588631 atgtttagggaaatatgctcttttgacccctaacataaggga 1588590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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