View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18858_low_9 (Length: 400)
Name: NF18858_low_9
Description: NF18858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18858_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 12 - 356
Target Start/End: Complemental strand, 18062355 - 18062005
Alignment:
| Q |
12 |
atgaacataccgaatttactatctgataaaacttttttagttagcgatattaatagttatttcatatatgattggaataatatcattaatagttgtattg |
111 |
Q |
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| T |
18062355 |
atgaacataccgaatttactatctgataaaacttttttagttagcgatagtaatagttatttcatatatgattggaataatatcattaatagttgtattg |
18062256 |
T |
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| Q |
112 |
aaggttatatgctttctgaaatcggtattgatagttccattata------------gagaatatcattgnnnnnnntccgcaggaggaggataaaaatga |
199 |
Q |
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| T |
18062255 |
aaggttatatgctttctgaaatcggtattgatagttccattatacataatatcattgagaataacaatgagaataatccgcaggaggaggataaaaatga |
18062156 |
T |
|
| Q |
200 |
aaaattccacaagtccagttatagatttgattacagannnnnnnacagatttgatgttagatttgaagtcagatttgaaacggatagtgagagtgataaa |
299 |
Q |
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| T |
18062155 |
aaaattacacaagtccagttatagatttgattacagatttgattacagatttgatgttagatttgaagtcagatttgaaac------tgatagtgataaa |
18062062 |
T |
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| Q |
300 |
gaaaaggatagtggcaatgatgatgataagctccaaaaggctagtgacattttagaa |
356 |
Q |
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| T |
18062061 |
gaaaaggatagtggcaatgatgatgataagctccaaaaggctagtgacattttagaa |
18062005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 12 - 168
Target Start/End: Complemental strand, 27008615 - 27008459
Alignment:
| Q |
12 |
atgaacataccgaatttactatctgataaaacttttttagttagcgatattaatagttatttcatatatgattggaataatatcattaatagttgtattg |
111 |
Q |
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||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27008615 |
atgaacatatctaatttactatctgataaaacttttttagttagcgatagtaatagttatttcatatatgattggaataatatcattaatagttgtattg |
27008516 |
T |
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| Q |
112 |
aaggttatatgctttctgaaatcggtattgatagttccattatagagaatatcattg |
168 |
Q |
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| T |
27008515 |
aaggttatatgctttctgaaatctttattgatagttccattatacataatatcattg |
27008459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 316 - 356
Target Start/End: Complemental strand, 18061757 - 18061716
Alignment:
| Q |
316 |
atgatgatgataagct-ccaaaaggctagtgacattttagaa |
356 |
Q |
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| T |
18061757 |
atgatgatgataagctaccaaaaggctagtgacattttagaa |
18061716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 213
Target Start/End: Complemental strand, 27008434 - 27008402
Alignment:
| Q |
181 |
aggaggaggataaaaatgaaaaattccacaagt |
213 |
Q |
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| T |
27008434 |
aggaggaggataaaaatgaaaaattccacaagt |
27008402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 9195565 - 9195603
Alignment:
| Q |
102 |
agttgtattgaaggttatatgctttctgaaatcggtatt |
140 |
Q |
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| T |
9195565 |
agttgtattgaaggttatatcctttctgaaatcggtatt |
9195603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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