View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18859_high_4 (Length: 443)
Name: NF18859_high_4
Description: NF18859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18859_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 21 - 412
Target Start/End: Original strand, 48671253 - 48671644
Alignment:
| Q |
21 |
gttgggacggtgtccgtgtcggtggtggttgatttgaagacacggtggtaaactaattcagtggtggcaagtgtgacattaaggcctttggttaataggg |
120 |
Q |
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| T |
48671253 |
gttgggacggtgtctgtgtcggtggtggttgatttgaagacacggtggtaaactaattcagtggtggcaagtgtgacattaaggcctttggttaataggg |
48671352 |
T |
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| Q |
121 |
atttgcctagtctaagtaaagggtttatgtgaccttgagctgaaaacgcaaccaataggacatgaatttctggtttgatttctgtgtcttctgaagacat |
220 |
Q |
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| T |
48671353 |
atttgcctagtctaagtaaagggtttatgtgaccttgagctgaaaacgcaaccaataggacatgaatttctggtttgatttctgtgtcttctgaagacat |
48671452 |
T |
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| Q |
221 |
ggttggttgaagaattgtttgaattatgaaaagtgaaggaagtgaatttggatcagattaatgtttgattttgtgtggtttagtttttcttttataaagt |
320 |
Q |
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| T |
48671453 |
ggttggttgaagaattgtttgaattatgaaaagtgaaggaagtgaatttggatcagattaatgtttgattttgtgtggtttagtttttcttttataaagt |
48671552 |
T |
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| Q |
321 |
ggtataaactaggataggagggaatctttggagccctgtaacatacagacagatagacacggtccagtgattcgtatgggattacgttggca |
412 |
Q |
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|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48671553 |
ggtataaactaggataggagggaatccttggagccttgtaacatacagacagatagacacggtccagtgattcgtatgggattacgttggca |
48671644 |
T |
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