View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18859_high_7 (Length: 285)

Name: NF18859_high_7
Description: NF18859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18859_high_7
NF18859_high_7
[»] chr5 (12 HSPs)
chr5 (19-281)||(38442963-38443223)
chr5 (160-281)||(38182962-38183083)
chr5 (160-281)||(38188048-38188169)
chr5 (160-281)||(38210188-38210309)
chr5 (154-281)||(38183191-38183318)
chr5 (154-281)||(38215039-38215166)
chr5 (160-281)||(38169517-38169638)
chr5 (160-281)||(38197466-38197587)
chr5 (160-281)||(38215274-38215394)
chr5 (154-281)||(38185300-38185427)
chr5 (154-281)||(38212930-38213057)
chr5 (175-274)||(38453279-38453380)


Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 281
Target Start/End: Original strand, 38442963 - 38443223
Alignment:
Q  19 aagtcaaactatatttgccatagtttatttatttaaaactctctttcattcccccctaatattttggaaattcagttaatgaaaatacatataaatttga 118  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  38442963 aagtccaactatatt-gccatagtttatttatttaaaactctctttcattcccccctaatattttggaaattcagttaatgaaa-tacatataaatttga 38443060  T
Q  119 atatctcacaattcacatagttnnnnnnncagaaggtcccaacagtttcacccgtcttttctcgaaccctcttttcactctcagtaccctctcaaaacac 218  Q
    ||||||||||||||||||||||        |||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  38443061 atatctcacaattcacatagttaaaaaaagagaaggtcccaacagtttcatccgtcttttctcgaaccctcttttcattctcaataccctctcaaaacac 38443160  T
Q  219 tttcaaacgatggagagagtcaagttcatgattacctatggtggaaaaatccaacctatgctt 281  Q
    |||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||| ||||    
T  38443161 tttcaaacgatggagagagtcaagctcatgattacttatggtggagaaatccaacctaggctt 38443223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 160 - 281
Target Start/End: Complemental strand, 38183083 - 38182962
Alignment:
Q  160 acagtttcacccgtcttttctcgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagttcatgattacctatgg 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38183083 acagtttcacccgtcttttctcgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagctcatgattacctatgg 38182984  T
Q  260 tggaaaaatccaacctatgctt 281  Q
    ||||||||||||||||| ||||    
T  38182983 tggaaaaatccaacctaggctt 38182962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 160 - 281
Target Start/End: Original strand, 38188048 - 38188169
Alignment:
Q  160 acagtttcacccgtcttttctcgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagttcatgattacctatgg 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38188048 acagtttcacccgtcttttctcgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagctcatgattacctatgg 38188147  T
Q  260 tggaaaaatccaacctatgctt 281  Q
    ||||||||||||||||| ||||    
T  38188148 tggaaaaatccaacctaggctt 38188169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 160 - 281
Target Start/End: Complemental strand, 38210309 - 38210188
Alignment:
Q  160 acagtttcacccgtcttttctcgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagttcatgattacctatgg 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38210309 acagtttcacccgtcttttctcgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagctcatgattacctatgg 38210210  T
Q  260 tggaaaaatccaacctatgctt 281  Q
    ||||||||||||||||| ||||    
T  38210209 tggaaaaatccaacctaggctt 38210188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 154 - 281
Target Start/End: Original strand, 38183191 - 38183318
Alignment:
Q  154 gtcccaacagtttcacccgtcttttctcgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagttcatgattac 253  Q
    |||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  38183191 gtcccaactgtttcagacgtcttttctcgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagctcatgattac 38183290  T
Q  254 ctatggtggaaaaatccaacctatgctt 281  Q
    ||||||||||||||||||||||| ||||    
T  38183291 ctatggtggaaaaatccaacctaggctt 38183318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 154 - 281
Target Start/End: Complemental strand, 38215166 - 38215039
Alignment:
Q  154 gtcccaacagtttcacccgtcttttctcgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagttcatgattac 253  Q
    |||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  38215166 gtcccaactgtttcagacgtcttttctcgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagctcatgattac 38215067  T
Q  254 ctatggtggaaaaatccaacctatgctt 281  Q
    ||||||||||||||||||||||| ||||    
T  38215066 ctatggtggaaaaatccaacctaggctt 38215039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 160 - 281
Target Start/End: Original strand, 38169517 - 38169638
Alignment:
Q  160 acagtttcacccgtcttttctcgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagttcatgattacctatgg 259  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  38169517 acagtttcacccgtcttttctcgaaccctctttacactctcagtaccctctctaaacactttcaaacgatggagagagtcaagctcatgattacctatgg 38169616  T
Q  260 tggaaaaatccaacctatgctt 281  Q
    ||||||||||||||||| ||||    
T  38169617 tggaaaaatccaacctaggctt 38169638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 160 - 281
Target Start/End: Complemental strand, 38197587 - 38197466
Alignment:
Q  160 acagtttcacccgtcttttctcgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagttcatgattacctatgg 259  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  38197587 acagtttcacccgtcttttctcgaaccctctttacactctcagtaccctctctaaacactttcaaacgatggagagagtcaagctcatgattacctatgg 38197488  T
Q  260 tggaaaaatccaacctatgctt 281  Q
    ||||||||||||||||| ||||    
T  38197487 tggaaaaatccaacctaggctt 38197466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 160 - 281
Target Start/End: Original strand, 38215274 - 38215394
Alignment:
Q  160 acagtttcacccgtcttttctcgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagttcatgattacctatgg 259  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38215274 acagtttcacccgtcttttcttgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagctcatgattacctatgg 38215373  T
Q  260 tggaaaaatccaacctatgctt 281  Q
    ||| ||||||||||||| ||||    
T  38215374 tgg-aaaatccaacctaggctt 38215394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 154 - 281
Target Start/End: Original strand, 38185300 - 38185427
Alignment:
Q  154 gtcccaacagtttcacccgtcttttctcgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagttcatgattac 253  Q
    |||||||| ||||||  |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  38185300 gtcccaactgtttcagacgtcttttctcgaatcctattttcactctcagtaccctctcaaaacactttcaaactatggagagagtcaagctcatgattac 38185399  T
Q  254 ctatggtggaaaaatccaacctatgctt 281  Q
    |||||||| |||||||||||||| ||||    
T  38185400 ctatggtgcaaaaatccaacctaggctt 38185427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 154 - 281
Target Start/End: Complemental strand, 38213057 - 38212930
Alignment:
Q  154 gtcccaacagtttcacccgtcttttctcgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagttcatgattac 253  Q
    |||||||| ||||||  |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  38213057 gtcccaactgtttcagacgtcttttctcgaatcctattttcactctcagtaccctctcaaaacactttcaaactatggagagagtcaagctcatgattac 38212958  T
Q  254 ctatggtggaaaaatccaacctatgctt 281  Q
    |||||||| |||||||||||||| ||||    
T  38212957 ctatggtgcaaaaatccaacctaggctt 38212930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 175 - 274
Target Start/End: Complemental strand, 38453380 - 38453279
Alignment:
Q  175 ttttctcgaaccctcttttcactct----cagtaccctctcaaaacactttcaaacgatggagagagtcaagttcatgattacctatggtggaaaaatcc 270  Q
    |||||||||| |||||||||| |||    | |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38453380 ttttctcgaatcctcttttcaatcttggtcggtaccctctcaaaac--tttcaaacgatggagagagtcaagttcatgattacctatggtggaaaaatcc 38453283  T
Q  271 aacc 274  Q
    ||||    
T  38453282 aacc 38453279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University