View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18859_low_1 (Length: 516)
Name: NF18859_low_1
Description: NF18859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18859_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 1 - 504
Target Start/End: Complemental strand, 38712854 - 38712358
Alignment:
| Q |
1 |
atttgtaaccaaactttttggtcaagaatcaagatagttaacttaccattcggtgtctactctcctcttgatgaactcatccacaacctgcaaataataa |
100 |
Q |
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| T |
38712854 |
atttgtaaccaaactttttggtcaaga-------tagttaacttaccattcggtgtctactctcctcttgatgaactcatccacaacctgcaaataataa |
38712762 |
T |
|
| Q |
101 |
tgttttcccatcataaagacttggacgcatcaaactgaaagaacagcatataatagccatatataatttgagcactatttgcacaaatgttgctgattgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38712761 |
tgttttcccatcataaagacttggacgcatcaaactgaaagaacagcatataatagccatatataatttgagcactatttgcacaaatgttgctgattgt |
38712662 |
T |
|
| Q |
201 |
ccacaccagaaaactaattacgctacataatttcacgataagtatgacatactagaatttattagtttaatgatgaaaaataaaattgattagtctgtca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38712661 |
ccacaccagaaaactaattacgctacataatttcacgataagtatgacaaactagaatttattagtttaatgatgaaaaataaaattgattagtctgtca |
38712562 |
T |
|
| Q |
301 |
atcactttggctctgagctcatctgcaagttctttttgcctggtgagacttggaggtgggtccccttttctgaggcaggcaccgtagaccacagatctaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38712561 |
atcactttggctctgagctcatctgcaagttctttttgcctggtgagacttggaggtgggtccccttttctgaggcaggcaccgtagaccacagatctaa |
38712462 |
T |
|
| Q |
401 |
acatacatctaccatctcctggtattcctgcaacaacnnnnnnncgtttcaaaattaagtagaatcagaaaaattaataataagctgcaaagcacgtgca |
500 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38712461 |
acatacatctaccatctcctggtattcctgcaacaacaaaaaaacgtttcaaaattaagtagaatcagaaaaattaataataagctgcaaagcacgtgca |
38712362 |
T |
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