View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18859_low_10 (Length: 249)
Name: NF18859_low_10
Description: NF18859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18859_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 13)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 38453142 - 38452902
Alignment:
| Q |
1 |
ttcaagtatcaactccttggtgaagatttcgatgctttgatcccggtttataacgaaaaagatcttgatcatatgatgttggagtatgatcatatgtgtc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
38453142 |
ttcaagtatcaactccttggtgaagatttcgatgctttgatcccggtttataacgaagaagatctcaatcatatgatgttagagtatgatcatatgtgtc |
38453043 |
T |
|
| Q |
101 |
actttttacgaaagcctgcatggttgagggtcttcctcttccctgtccctgttaacaacaacaaggcatcttttgattctttggcttccgccgactcgct |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
38453042 |
acttttcacgaaagcctgcatggttgagggtcttcctcttccctgtccttgttaacaacaacaaggcatcttttgattctttaacttccgtcgactcgct |
38452943 |
T |
|
| Q |
201 |
caattccgttcaagtttctccttttgaagaatattcatctc |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38452942 |
caattccgttcaagtttctccttttgaagaatattcatctc |
38452902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 38215524 - 38215764
Alignment:
| Q |
1 |
ttcaagtatcaactccttggtgaagatttcgatgctttgatcccggtttataacgaaaaagatcttgatcatatgatgttggagtatgatcatatgtgtc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||| ||||||||||||| |||||||||| |||||||| |
|
|
| T |
38215524 |
ttcaagtatcaactccttggtgaagatttggatgctttgatcccagtttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgtc |
38215623 |
T |
|
| Q |
101 |
actttttacgaaagcctgcatggttgagggtcttcctcttccctgtccctgttaacaacaacaaggcatcttttgattctttggcttccgccgactcgct |
200 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38215624 |
gcttttcacaaaagcctgcatggttgagggtcttcctcttcccggtccctattaacaacaacaaggcatcttttgattctttggcttccgtcgactcgct |
38215723 |
T |
|
| Q |
201 |
caattccgttcaagtttctccttttgaagaatattcatctc |
241 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38215724 |
caattccgttcaagtttttccttttgaagaatattcatctc |
38215764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 38182832 - 38182592
Alignment:
| Q |
1 |
ttcaagtatcaactccttggtgaagatttcgatgctttgatcccggtttataacgaaaaagatcttgatcatatgatgttggagtatgatcatatgtgtc |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||||| |||||||||||| ||||||| ||||||||||||| |||||||||| |||||||| |
|
|
| T |
38182832 |
ttcaagtatcaactacttggtgaagatttggatgctttgatcccagtttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgtc |
38182733 |
T |
|
| Q |
101 |
actttttacgaaagcctgcatggttgagggtcttcctcttccctgtccctgttaacaacaacaaggcatcttttgattctttggcttccgccgactcgct |
200 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38182732 |
gcttttcacaaaagcctgcatggttgagggtcttcctcttcccggtccctattaacaacaacaaggcatcttttgattctttggcttccgtcgactcgct |
38182633 |
T |
|
| Q |
201 |
caattccgttcaagtttctccttttgaagaatattcatctc |
241 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38182632 |
caattccgttcaagtttttccttttgaagaatattcatctc |
38182592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 38188299 - 38188539
Alignment:
| Q |
1 |
ttcaagtatcaactccttggtgaagatttcgatgctttgatcccggtttataacgaaaaagatcttgatcatatgatgttggagtatgatcatatgtgtc |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||||| |||||||||||| ||||||| ||||||||||||| |||||||||| |||||||| |
|
|
| T |
38188299 |
ttcaagtatcaactacttggtgaagatttggatgctttgatcccagtttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgtc |
38188398 |
T |
|
| Q |
101 |
actttttacgaaagcctgcatggttgagggtcttcctcttccctgtccctgttaacaacaacaaggcatcttttgattctttggcttccgccgactcgct |
200 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38188399 |
gcttttcacaaaagcctgcatggttgagggtcttcctcttcccggtccctattaacaacaacaaggcatcttttgattctttggcttccgtcgactcgct |
38188498 |
T |
|
| Q |
201 |
caattccgttcaagtttctccttttgaagaatattcatctc |
241 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38188499 |
caattccgttcaagtttttccttttgaagaatattcatctc |
38188539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 38210058 - 38209818
Alignment:
| Q |
1 |
ttcaagtatcaactccttggtgaagatttcgatgctttgatcccggtttataacgaaaaagatcttgatcatatgatgttggagtatgatcatatgtgtc |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||||| |||||||||||| ||||||| ||||||||||||| |||||||||| |||||||| |
|
|
| T |
38210058 |
ttcaagtatcaactacttggtgaagatttggatgctttgatcccagtttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgtc |
38209959 |
T |
|
| Q |
101 |
actttttacgaaagcctgcatggttgagggtcttcctcttccctgtccctgttaacaacaacaaggcatcttttgattctttggcttccgccgactcgct |
200 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38209958 |
gcttttcacaaaagcctgcatggttgagggtcttcctcttcccggtccctattaacaacaacaaggcatcttttgattctttggcttccgtcgactcgct |
38209859 |
T |
|
| Q |
201 |
caattccgttcaagtttctccttttgaagaatattcatctc |
241 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38209858 |
caattccgttcaagtttttccttttgaagaatattcatctc |
38209818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 38185557 - 38185797
Alignment:
| Q |
1 |
ttcaagtatcaactccttggtgaagatttcgatgctttgatcccggtttataacgaaaaagatcttgatcatatgatgttggagtatgatcatatgtgtc |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||||| |||||||||||| ||||||| ||||||||||||| |||||||||| |||||||| |
|
|
| T |
38185557 |
ttcaagtatcaactacttggtgaagatttggatgctttgatcccagtttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgtc |
38185656 |
T |
|
| Q |
101 |
actttttacgaaagcctgcatggttgagggtcttcctcttccctgtccctgttaacaacaacaaggcatcttttgattctttggcttccgccgactcgct |
200 |
Q |
| |
|
||||| || |||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38185657 |
gcttttcacaaaagcctgcatggttgagagtcttcctcttcccggtccctattaacaacaacaaggcatcttttgattctttggcttccgtcgactcgct |
38185756 |
T |
|
| Q |
201 |
caattccgttcaagtttctccttttgaagaatattcatctc |
241 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38185757 |
caattccgttcaagtttttccttttgaagaatattcatctc |
38185797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 38212800 - 38212560
Alignment:
| Q |
1 |
ttcaagtatcaactccttggtgaagatttcgatgctttgatcccggtttataacgaaaaagatcttgatcatatgatgttggagtatgatcatatgtgtc |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||||| |||||||||||| ||||||| ||||||||||||| |||||||||| |||||||| |
|
|
| T |
38212800 |
ttcaagtatcaactacttggtgaagatttggatgctttgatcccagtttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgtc |
38212701 |
T |
|
| Q |
101 |
actttttacgaaagcctgcatggttgagggtcttcctcttccctgtccctgttaacaacaacaaggcatcttttgattctttggcttccgccgactcgct |
200 |
Q |
| |
|
||||| || |||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38212700 |
gcttttcacaaaagcctgcatggttgagagtcttcctcttcccggtccctattaacaacaacaaggcatcttttgattctttggcttccgtcgactcgct |
38212601 |
T |
|
| Q |
201 |
caattccgttcaagtttctccttttgaagaatattcatctc |
241 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38212600 |
caattccgttcaagtttttccttttgaagaatattcatctc |
38212560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 38169768 - 38170008
Alignment:
| Q |
1 |
ttcaagtatcaactccttggtgaagatttcgatgctttgatcccggtttataacgaaaaagatcttgatcatatgatgttggagtatgatcatatgtgtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||| ||||| |||||||||| |||||||| |
|
|
| T |
38169768 |
ttcaagtatcaactccttggtgaagatttcgatgctttgatcccaatttataacgaagaagatctcaatcatattatgttcgagtatgatcgtatgtgtc |
38169867 |
T |
|
| Q |
101 |
actttttacgaaagcctgcatggttgagggtcttcctcttccctgtccctgttaacaacaacaaggcatcttttgattctttggcttccgccgactcgct |
200 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| | | ||||| |
|
|
| T |
38169868 |
acttttcacgaaagcctgcatggctgagggtcttcctcttcccggtccctattaacaacaacaaggcatcttttgattctttggcttccgtcaaatcgct |
38169967 |
T |
|
| Q |
201 |
caattccgttcaagtttctccttttgaagaatattcatctc |
241 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38169968 |
caatttcgttcgagtttctccttttgaagaatattcatctc |
38170008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 38443353 - 38443540
Alignment:
| Q |
1 |
ttcaagtatcaactccttggtgaagatttcgatgctttgatcccggtttataacgaaaaagatcttgatcatatgatgttggagtatgatcatatgtgtc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||| ||||||||||||| |||||||||| |||||||| |
|
|
| T |
38443353 |
ttcaagtatcaactccttggtgaagattttgatgctttgatcccagtttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgtc |
38443452 |
T |
|
| Q |
101 |
actttttacgaaagcctgcatggttgagggtcttcctcttccctgtccctgttaacaacaacaaggcatcttttgattctttggcttc |
188 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38443453 |
acttttcacgaaagcctgcatggttgagggtcttcctcttccctgtccctgttaacaacaacaaggcatcttttgattctttggcttc |
38443540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 68 - 241
Target Start/End: Original strand, 38219953 - 38220126
Alignment:
| Q |
68 |
atcatatgatgttggagtatgatcatatgtgtcactttttacgaaagcctgcatggttgagggtcttcctcttccctgtccctgttaacaacaacaaggc |
167 |
Q |
| |
|
||||||||||||| |||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
38219953 |
atcatatgatgttcgagtatgatcgtatgtgtcgcttttcacgaaagcctgcatggttgagggtcttcctcttcccggtccctattaacaacaacaaggc |
38220052 |
T |
|
| Q |
168 |
atcttttgattctttggcttccgccgactcgctcaattccgttcaagtttctccttttgaagaatattcatctc |
241 |
Q |
| |
|
|||||||||||||||||||||| | | |||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
38220053 |
atcttttgattctttggcttccatcaaatcgctcaattccgttcaagtctctccttttgaagaatattcatctc |
38220126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 7 - 189
Target Start/End: Original strand, 38155845 - 38156027
Alignment:
| Q |
7 |
tatcaactccttggtgaagatttcgatgctttgatcccggtttataacgaaaaagatcttgatcatatgatgttggagtatgatcatatgtgtcactttt |
106 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||| | |||| | | ||| ||||| |
|
|
| T |
38155845 |
tatcaactccttggtgaagatctcgatgctttgattccggtttataacgaagaagatcttgatcatatgatgttcgagaacgatcgtttatgttgctttt |
38155944 |
T |
|
| Q |
107 |
tacgaaagcctgcatggttgagggtcttcctcttccctgtccctgttaacaacaacaaggcatcttttgattctttggcttcc |
189 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||||| ||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
38155945 |
cacgaaagcctgcaaagttgagggtcttcctcttccctctccctattagcaacaacaaggcatcttttaattctttggcttcc |
38156027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 38183448 - 38183479
Alignment:
| Q |
1 |
ttcaagtatcaactccttggtgaagatttcga |
32 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
38183448 |
ttcaagtatcaactccttggtgaagatttcga |
38183479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 38214909 - 38214878
Alignment:
| Q |
1 |
ttcaagtatcaactccttggtgaagatttcga |
32 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
38214909 |
ttcaagtatcaactccttggtgaagatttcga |
38214878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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