View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18859_low_3 (Length: 468)
Name: NF18859_low_3
Description: NF18859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18859_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 14 - 373
Target Start/End: Complemental strand, 567438 - 567081
Alignment:
| Q |
14 |
gaacctgtggccgtaacgacactttttagaccgatgcgcttggcaatcatagcttgtgcaagagcattgttcatcttgtgagagccagtgtggttgagat |
113 |
Q |
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| T |
567438 |
gaaccggtggccgtaacgacactttttagaccgatgcgcttggcaatcatagcttgtgcaagagcattgttcatcttgtgagagccagtgtggttgagat |
567339 |
T |
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| Q |
114 |
cctctctttttaagtatatttcaggccctttcccaccattcttgcttttgtaatgctctgacaacctttgagcatgatacaaaggtgtctctctaccaac |
213 |
Q |
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| T |
567338 |
cctctctttttaagtatatttcaggccctttcccaccattcttgcttttgtaatgctctgacaacctttgagcatgatacaaaggtgtctctctaccaac |
567239 |
T |
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| Q |
214 |
atagtctcttaatgctgttgctagctctgcctgtgggaacaattatttttatgttatttgatagtttgaggaattcacaaacataagattaggtactata |
313 |
Q |
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| T |
567238 |
atagtctcttaatgctgttgctagctctgcctgtgggaacaattatttttatgttatttgatagtttgaggaattcacaa--ataagagtaggtactata |
567141 |
T |
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| Q |
314 |
tattatctaaattttaaattaatttcgtaaaaagacagattttgtatccgaaaatcgaga |
373 |
Q |
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| T |
567140 |
tattatctaaattttaaattaatttcgtaaaaagacagattttgtatccgaaaatcgaga |
567081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 373 - 450
Target Start/End: Complemental strand, 567041 - 566964
Alignment:
| Q |
373 |
acggtatatccttcatcctaattaacaaattacctgaaaaacatcatcgtggagggcatttttgaactcagcttcaag |
450 |
Q |
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| T |
567041 |
acggtatatccttcatcctaattaacaaattacctgaaaaacatcatcgtggagggcatttttgaactcagcttcaag |
566964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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