View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18859_low_5 (Length: 371)
Name: NF18859_low_5
Description: NF18859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18859_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 48672093 - 48671751
Alignment:
| Q |
1 |
acatataattgcaaccttggaagtgttattgtaaaagacaatcaacgcgtggtagaaaaatacgtctagtatctttgattaaaatggtnnnnnnntatta |
100 |
Q |
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| T |
48672093 |
acatatagttgcaaccttggtagtgttattataaaagacaatcaacgcgtggtagaaaaatacgtctagtatctttgattaaaatggtaaaaaa-tatta |
48671995 |
T |
|
| Q |
101 |
cgaatacactatgaatttcaaaatgttaccacaaaacaaccaaacatgtctggcgctgtttgataaatatgataaaacgtttgaaatgtaatccatcaaa |
200 |
Q |
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| T |
48671994 |
cgaatacactatgaatttcaaaatgttaccacaaaacaaccaaacatgtctggcgctgtttgataaatatggtaaaacgtttgaaatgtaatccatcaaa |
48671895 |
T |
|
| Q |
201 |
catagtaacattatcacgaaaatgggtaagacatttaaatgtaatcgcgagtttaatgatgtgccaaaaataaaacaccttgaaatgtataaacttaaat |
300 |
Q |
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| T |
48671894 |
catagtaacgttatcacgaaaatgggtaagacatttaaatgtaatcgcgag-ttaaagatgtgccaaaaataaaacaccttgaaatgtataaacttaaat |
48671796 |
T |
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| Q |
301 |
atttggttagttttatatata----tttagtaaatggttaattct |
341 |
Q |
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| T |
48671795 |
atttggttagtcttatatatatatttttagtaaatggttaattct |
48671751 |
T |
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