View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18860_high_4 (Length: 298)
Name: NF18860_high_4
Description: NF18860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18860_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 30292479 - 30292212
Alignment:
| Q |
1 |
gcacaaaacttgttcttgattaatttattcatagtagaaaggtggaactctagttatagttacaagctaatgccgttttattcattgctcactatgagct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30292479 |
gcacaaaacttgttcttgattaatttattcatagtaggaaagtggaactctagttatagttacaagctaatgccgttttattcattgctcactatgagct |
30292380 |
T |
|
| Q |
101 |
atagcttcttagagcgaacaagcataataagcattaaaaagttcccgaaattgaagaaataggctccctttttctctggcttcgaccttcttccctttcc |
200 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30292379 |
---------tagagcatacaagcataataagcattaaaacgttcccgaaattgaagaaataggctccctttttctctggcttcgaccttcttccctttcc |
30292289 |
T |
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| Q |
201 |
ctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagcctctcaacatcttgagctgatcc |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
30292288 |
ctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaacatcttgagctgatcc |
30292212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 30315997 - 30315712
Alignment:
| Q |
1 |
gcacaaaacttgttcttgattaatttattcatagtagaaa-ggtggaactctagttatagttacaagctaatgccgttttattcattgctcactatgagc |
99 |
Q |
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||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||| | ||||||| |||||||||||||||| ||||||||||||||| |
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| T |
30315997 |
gcacaaaacttattcttgattaatttattcatagtacaaaaggtggaactctagttacaattacaagataatgccgttttattctttgctcactatgagc |
30315898 |
T |
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| Q |
100 |
tatagcttcttagagcgaacaagcataataag--------cattaaaaagttcccgaaattgaagaaataggctccctttttctctggcttcgaccttct |
191 |
Q |
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| T |
30315897 |
tatagttccttacagcatacatgcataacatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttgtctctggcttcgaccttct |
30315798 |
T |
|
| Q |
192 |
tccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagcctctcaacatcttgagctgatcc |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
30315797 |
tccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaacatcttgagctgatcc |
30315712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 4 - 277
Target Start/End: Complemental strand, 30305127 - 30304846
Alignment:
| Q |
4 |
caaaacttgttcttgattaatttattcatagtagaaaggtggaactctagttatagttacaagctaatgccgttttattcattgctcactatgagctata |
103 |
Q |
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|||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||| ||||||| |
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| T |
30305127 |
caaaacttattcttgattcagttattcatagtagaaaggtggaactctagttatagttacaagataatgccgttttattcatcgctcattattagctata |
30305028 |
T |
|
| Q |
104 |
gcttcttagagcgaacaagcataataag--------cattaaaaagttcccgaaattgaagaaataggctccctttttctctggcttcgaccttcttccc |
195 |
Q |
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||| | || | | || |||||||| |||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
30305027 |
gctccatatatcatacttgcataatatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttgtctctggcttcgaccttcttccc |
30304928 |
T |
|
| Q |
196 |
tttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagcctctcaacatcttgagctgatcc |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
30304927 |
tttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaacatcttgagctgatcc |
30304846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 30287456 - 30287178
Alignment:
| Q |
1 |
gcacaaaacttgttcttgattaatttattcatagtagaaaggtggaactctagttatagttacaagctaatgccgttttattcattgctcactatgagct |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||| || |||| |||||||| |
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| T |
30287456 |
gcacaaaacttattcttgattaatttattcatagtagaaaggaggaactctagtta------caagataatgccgttttattcttttctcattatgagct |
30287363 |
T |
|
| Q |
101 |
atagcttcttagagcgaacaagcataataag--------cattaaaaagttcccgaaattgaagaaataggctccctttttctctggcttcgaccttctt |
192 |
Q |
| |
|
|||| | |||| ||| ||| |||||| | |||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
30287362 |
atagttccttacagcatacatgcataacatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttgtctctggcttcgaccttctt |
30287263 |
T |
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| Q |
193 |
ccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagcctctcaacatcttgagctgatcc |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
30287262 |
ccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaacatcttgagctgatcc |
30287178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 30300332 - 30300054
Alignment:
| Q |
1 |
gcacaaaacttgttcttgattaatttattcatagtagaaaggtggaactctagttatagttacaagctaatgccgttttattcattgctcactatgagct |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||| || ||||||||||||||||| || |||| || ||||||||||||| ||||||||||||||| |
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| T |
30300332 |
gcacaaaacttattcttgattaatttattcatggtggaaaggtggaactctagata------caagatattgccgttttattctctgctcactatgagct |
30300239 |
T |
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| Q |
101 |
atagcttcttagagcgaacaagcataataag--------cattaaaaagttcccgaaattgaagaaataggctccctttttctctggcttcgaccttctt |
192 |
Q |
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|| || |||| ||| |||||||||||| |||||||| |||| |||||||||| ||| ||||||||| |||||||||||||||||||| |
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| T |
30300238 |
atgactccttacagcatacaagcataatatttgatcactcattaaaatactcccaaaattgaagatataagctccctttgtctctggcttcgaccttctt |
30300139 |
T |
|
| Q |
193 |
ccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagcctctcaacatcttgagctgatcc |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
30300138 |
ccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaacatcttgagctgatcc |
30300054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 198 - 277
Target Start/End: Complemental strand, 46810582 - 46810503
Alignment:
| Q |
198 |
tccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagcctctcaacatcttgagctgatcc |
277 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| || ||||||| |||||| ||||| |||| ||| ||||| |
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| T |
46810582 |
tccctttgttgaggttgagcatttgcaaagtaagattgtctttggttctttattagcctatcaacctcttcagcagatcc |
46810503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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