View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18860_low_1 (Length: 441)

Name: NF18860_low_1
Description: NF18860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18860_low_1
NF18860_low_1
[»] chr5 (3 HSPs)
chr5 (18-441)||(30654653-30655071)
chr5 (18-326)||(14416903-14417199)
chr5 (188-263)||(1326049-1326125)
[»] chr7 (2 HSPs)
chr7 (18-323)||(25035296-25035590)
chr7 (18-203)||(17710825-17711002)
[»] chr2 (3 HSPs)
chr2 (18-251)||(18814889-18815120)
chr2 (42-128)||(45340796-45340882)
chr2 (21-61)||(45404463-45404503)
[»] chr6 (2 HSPs)
chr6 (18-167)||(7913131-7913279)
chr6 (18-61)||(7601077-7601120)
[»] chr3 (3 HSPs)
chr3 (90-249)||(20387893-20388054)
chr3 (18-61)||(23363020-23363063)
chr3 (18-61)||(28698865-28698908)
[»] chr8 (4 HSPs)
chr8 (46-332)||(29386711-29387007)
chr8 (45-136)||(8833748-8833839)
chr8 (148-230)||(8833823-8833905)
chr8 (287-336)||(8834286-8834335)
[»] scaffold0209 (6 HSPs)
scaffold0209 (123-230)||(7573-7681)
scaffold0209 (123-230)||(21027-21135)
scaffold0209 (231-351)||(7432-7547)
scaffold0209 (231-351)||(20886-21001)
scaffold0209 (377-441)||(7305-7369)
scaffold0209 (377-441)||(20759-20823)
[»] chr1 (2 HSPs)
chr1 (67-136)||(33153533-33153603)
chr1 (146-362)||(33153343-33153551)
[»] chr4 (3 HSPs)
chr4 (18-115)||(8353546-8353642)
chr4 (18-61)||(2549523-2549566)
chr4 (18-61)||(8572905-8572948)


Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 441
Target Start/End: Complemental strand, 30655071 - 30654653
Alignment:
Q  18 atgttactcaatggtgaagactaggtagatcaatcagtaaaacatttatatattttatttcaaagatttcaacaagctaaaattgatagataatgaaaag 117  Q
    |||||||| ||| || |||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||| |||||||| ||||||||||||    
T  30655071 atgttactgaatagtcaagactaggtagatcaatcagtaaaatatttatatatttgacttcaaagatttcaacaagctgaaattgattgataatgaaaag 30654972  T
Q  118 aacaaatacattatatatctcttcaaaaaacaaatacattgtatatcattggaaatataaaatgagtagctaccaccctaatttaagcaaatcaaacaag 217  Q
    |||||||||||||||||||||||||||||| ||     |||||||||||||| ||||||||  || ||||||||||||||||||||||||||||||||||    
T  30654971 aacaaatacattatatatctcttcaaaaaaaaa-----ttgtatatcattggtaatataaatcgaatagctaccaccctaatttaagcaaatcaaacaag 30654877  T
Q  218 tttaattcaaatgcacatcgtttgtcaactacattgaatatctgaccagccaagccctctagaaaagctcatctccccttagcttgcagcaaccataagt 317  Q
    |||||||||||||| ||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30654876 tttaattcaaatgcgcatcgtttgtcaactatgttgaatatcggaccagccaagccctctagaaaagctcatctcccctgagcttgcagcaaccataagt 30654777  T
Q  318 gcaaactattcccagcagcgtgtatatactgaacaggtgactttgtaatgcattctacaagcgacaaagttagacaaaatttgagtcagtggggatgcca 417  Q
    |||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30654776 gcaaactattcccagcagcgtgtatatattgaacaggtcactttggaatgcattctacaagcgacaaagttagacaaaatttgagtcagtggggatgcca 30654677  T
Q  418 atatgtaacaaggaaacgaaaatt 441  Q
    ||||||||||||||||||||||||    
T  30654676 atatgtaacaaggaaacgaaaatt 30654653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 18 - 326
Target Start/End: Original strand, 14416903 - 14417199
Alignment:
Q  18 atgttactcaatggtgaagactaggtagatcaatcagtaaaacatttatatattttatttcaaagatttcaacaagctaaaattgatagataatgaaaag 117  Q
    |||||||| ||| |||||||||| ||||||||||||||||||||||||||||||         ||||||||| |||||||| ||| | || |||||||||    
T  14416903 atgttactgaatagtgaagactatgtagatcaatcagtaaaacatttatatatt---------agatttcaaaaagctaaacttggttgaaaatgaaaag 14416993  T
Q  118 aacaaatacattatatatctcttcaaaaaacaaatacattgtatatcattggaaatataaaatgagtagctaccaccctaatttaagcaaatcaaacaag 217  Q
    ||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  14416994 aacaaatacattatacatctcttaaaaaaa-aaatacattgtatatcattggaaatataaaatgagtacctaccaccctaatttaaacaaatcaaacaag 14417092  T
Q  218 tttaattcaaatg---cacatcgtttgtcaactacattgaatatctgaccagccaagccctctagaaaagctcatctccccttagcttgcagcaaccata 314  Q
    |||||||||||||   ||||||||||||||||| || ||||| |||||||     | |||||||||| |||||||||||||| | |||||||||||||||    
T  14417093 tttaattcaaatgacacacatcgtttgtcaactgcaatgaatctctgacc-----atccctctagaagagctcatctcccctgaacttgcagcaaccata 14417187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 188 - 263
Target Start/End: Original strand, 1326049 - 1326125
Alignment:
Q  188 taccaccctaatttaagcaaatcaaacaagtttaattcaaatg-cacatcgtttgtcaactacattgaatatctgac 263  Q
    |||||||||| |||||||  ||||||||||||||||||||||| ||| |||| |||||||  || ||||| ||||||    
T  1326049 taccaccctagtttaagcctatcaaacaagtttaattcaaatgacacgtcgtatgtcaaccccagtgaatctctgac 1326125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 18 - 323
Target Start/End: Original strand, 25035296 - 25035590
Alignment:
Q  18 atgttactcaatggtgaagactaggtagatcaatcagtaaaacatttatatattttatttcaaagatttcaacaagctaaaattgatagataatgaaaag 117  Q
    |||||||| ||| ||||| ||||||||||||||| |||||||||||||||||||| ||||||||         | |||||||| | | ||||||||||||    
T  25035296 atgttactgaatagtgaaaactaggtagatcaattagtaaaacatttatatatttgatttcaaa---------aggctaaaataggttgataatgaaaag 25035386  T
Q  118 aacaaatacattatatatctcttcaaaaaacaaatacattgtatatcattggaaatataaaatgagtagctaccaccctaatttaagcaaatcaaacaag 217  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  25035387 aacaaatacattatacatctcttcaaaaaacaaatatattgtatatcattggaaatataaaatgagtagctaccaccctaatttaaacaaatcaaacaag 25035486  T
Q  218 tttaattcaaatg---cacatcgtttgtcaactacattgaatatctgaccagccaagccctctagaaaagctcatctccccttagcttgcagcaaccata 314  Q
    ||||||| |||||   |||||||||| |||||| || ||||| |||||||     | |||||||||| ||||||||| || | | ||||||||||||| |    
T  25035487 tttaatttaaatgacacacatcgtttatcaactgcactgaatctctgacc-----atccctctagaagagctcatcttccttgaacttgcagcaaccaca 25035581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 17710825 - 17711002
Alignment:
Q  18 atgttactcaatggtgaagactaggtagatcaatcagtaaaacatttatatattttatttcaaagatttcaacaagctaaaattgatagataatgaaaag 117  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||         |||||||||||||| ||||||||||||    
T  17710825 atgttactgaatagtgaagactaggtagatcaatcagtaaaacatttatatatttgattacaaa---------aagctaaaattgattgataatgaaaag 17710915  T
Q  118 aacaaatacattatatatctcttcaaaaaacaaa--tacattgtatatcattggaaatataaaatgagtagctaccaccctaatttaa 203  Q
    |||||||||||||||| |||||| |||||| |||  |||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  17710916 aacaaatacattatat-tctcttaaaaaaaaaaaaatacaatgtatatcattgaaaatataaaatgagtagctaccaccctaatttaa 17711002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 142; Significance: 2e-74; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 18814889 - 18815120
Alignment:
Q  18 atgttactcaatggtgaagactaggtagatcaatcagtaaaacatttatatattttatttcaaagatttcaacaagctaaaattgatagataatgaaa-- 115  Q
    |||||||||||| |||||||||||||||||||||||||||||||| || |||||| ||||||||         |||||||||||||| ||||||||||      
T  18814889 atgttactcaatagtgaagactaggtagatcaatcagtaaaacatctagatatttgatttcaaa---------aagctaaaattgattgataatgaaatt 18814979  T
Q  116 --agaacaaatacattatatatctcttcaaaaaacaaatacattgtatatcattggaaatataaaatgagtagctaccaccctaatttaagcaaatcaaa 213  Q
      |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18814980 aaagaacaaatacattatatatctcttcaaaaaataaatacaatgtatatcattggaaatataaaatgagtagctaccaccctaatttaagcaaatcaaa 18815079  T
Q  214 caagtttaattcaaatg---cacatcgtttgtcaactacat 251  Q
    |||||||||||||||||   ||||||  |||||||||||||    
T  18815080 caagtttaattcaaatgacacacatccattgtcaactacat 18815120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 42 - 128
Target Start/End: Original strand, 45340796 - 45340882
Alignment:
Q  42 gtagatcaatcagtaaaacatttatatattttatttcaaagatttcaacaagctaaaattgatagataatgaaaagaacaaatacat 128  Q
    |||||||||||| | ||||||| | |||| | |||||||||||| ||||||||||||||| || | ||||||||| |||||||||||    
T  45340796 gtagatcaatcacttaaacattaagatatgtgatttcaaagattccaacaagctaaaattaattggtaatgaaaataacaaatacat 45340882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 45404503 - 45404463
Alignment:
Q  21 ttactcaatggtgaagactaggtagatcaatcagtaaaaca 61  Q
    ||||| ||| ||||||||| |||||||||||||||||||||    
T  45404503 ttactgaatagtgaagactgggtagatcaatcagtaaaaca 45404463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 18 - 167
Target Start/End: Complemental strand, 7913279 - 7913131
Alignment:
Q  18 atgttactcaatggtgaagactaggtagatcaatcagtaaaacatttatatattttatttcaaagatttcaacaagctaaaattgatagataatgaaaag 117  Q
    |||||||| ||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  7913279 atgttactgaatagtgatgactaggtagatcaatcagtaaaacatttatatatttgatttcaaagatttcaacaagctaaaattgattgataatgaaaag 7913180  T
Q  118 aacaaatacattatatatctcttcaaaaaacaaatacattgtatatcatt 167  Q
    |||||||| |||||||||||| |||||||||||||||||||||| |||||    
T  7913179 aacaaataaattatatatctc-tcaaaaaacaaatacattgtatgtcatt 7913131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 7601120 - 7601077
Alignment:
Q  18 atgttactcaatggtgaagactaggtagatcaatcagtaaaaca 61  Q
    |||||||| ||| ||||||||| |||||||||||||||||||||    
T  7601120 atgttactgaatagtgaagactgggtagatcaatcagtaaaaca 7601077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 90 - 249
Target Start/End: Complemental strand, 20388054 - 20387893
Alignment:
Q  90 caagctaaaattgatagataatgaaaagaacaaatacattatatatctcttcaaaaaacaaatacattgtatatcattggaaatataaaatgagtagcta 189  Q
    |||| ||||||| || ||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||| |||||||    
T  20388054 caaggtaaaatttattgatgatgaaaagaacaaatacattatatatctcttcaaaaaacaattacattgtgtatcattgaaaatataaaatgcgtagcta 20387955  T
Q  190 ccacccta-atttaagcaaatcaaacaagtttaattcaaatg-cacatcgtttgtcaactac 249  Q
      |||||| ||||||| ||||||||||||||||||||||||| |||||| | ||||||||||    
T  20387954 aaaccctatatttaagtaaatcaaacaagtttaattcaaatgacacatcctatgtcaactac 20387893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 23363063 - 23363020
Alignment:
Q  18 atgttactcaatggtgaagactaggtagatcaatcagtaaaaca 61  Q
    |||||||| ||| ||||||||| |||||||||||||||||||||    
T  23363063 atgttactgaatagtgaagactgggtagatcaatcagtaaaaca 23363020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 28698908 - 28698865
Alignment:
Q  18 atgttactcaatggtgaagactaggtagatcaatcagtaaaaca 61  Q
    |||||||| ||| ||||||||| |||||||||||||||||||||    
T  28698908 atgttacttaatagtgaagactgggtagatcaatcagtaaaaca 28698865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 46 - 332
Target Start/End: Original strand, 29386711 - 29387007
Alignment:
Q  46 atcaatcagtaaaacatttatatattttatttcaaagatttcaacaagctaaaattgatagataatgaaaagaacaaatacattatatatctcttcaaaa 145  Q
    |||||||||||||||||| | |||||| |||||||||||||||||||| |||||||||| |||||| |||| |||||||||  | ||||| |||| ||||    
T  29386711 atcaatcagtaaaacattaagatatttgatttcaaagatttcaacaaggtaaaattgattgataattaaaataacaaatacgctgtatatatcttaaaaa 29386810  T
Q  146 -------------aacaaatacattgtatatcattggaaatataaaatgagtagctaccaccctaatttaagcaaatcaaacaagtttaattcaaatg-- 230  Q
                 |||||||||||||||| |||||||||||| ||| ||||||| |||||| ||||||||||||||||||||||||| ||||||||||      
T  29386811 aaaaaaaaaaaaaaacaaatacattgtatgtcattggaaatacaaattgagtagttaccactctaatttaagcaaatcaaacaagttcaattcaaatgac 29386910  T
Q  231 -cacatcgtttgtcaactacattgaatatctgaccagccaagccctctagaaaagctcatctccccttagcttgcagcaaccataagtgcaaactattcc 329  Q
     |||||||  ||||||| | | ||||| |||  | | |||| |      |||||||||||||||| | | ||||||||||||||||||||||||||| ||    
T  29386911 acacatcgaatgtcaaccatagtgaatctctaccaacccaaac------gaaaagctcatctcccttaaacttgcagcaaccataagtgcaaactatgcc 29387004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 45 - 136
Target Start/End: Original strand, 8833748 - 8833839
Alignment:
Q  45 gatcaatcagtaaaacatttatatattttatttcaaagatttcaacaagctaaaattgatagataatgaaaagaacaaatacattatatatc 136  Q
    ||||||||||||||||||| | ||||||  ||||||| |||||||||||||||||||||| ||||||||||| | |||||||||||||||||    
T  8833748 gatcaatcagtaaaacattgagatatttagtttcaaatatttcaacaagctaaaattgattgataatgaaaatatcaaatacattatatatc 8833839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 148 - 230
Target Start/End: Original strand, 8833823 - 8833905
Alignment:
Q  148 caaatacattgtatatcattggaaatataaaatgagtagctaccaccctaatttaagcaaatcaaacaagtttaattcaaatg 230  Q
    |||||||||| ||||||| |||||||| ||| || |||| |||||||||||||||||||||||||||||||||||||||||||    
T  8833823 caaatacattatatatcaatggaaatacaaattgggtagttaccaccctaatttaagcaaatcaaacaagtttaattcaaatg 8833905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 287 - 336
Target Start/End: Original strand, 8834286 - 8834335
Alignment:
Q  287 catctccccttagcttgcagcaaccataagtgcaaactattcccagcagc 336  Q
    |||||||||| | ||||||||||||||||||||||||||| |||||||||    
T  8834286 catctcccctaaacttgcagcaaccataagtgcaaactatgcccagcagc 8834335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 53; Significance: 3e-21; HSPs: 6)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 123 - 230
Target Start/End: Complemental strand, 7681 - 7573
Alignment:
Q  123 atacattatatatctcttc-aaaaaacaaatacattgtatatcattggaaatataaaatgagtagctaccaccctaatttaagcaaatcaaacaagttta 221  Q
    ||||||| ||| ||||||| |||||| |||||||||||||||||||||||||| ||| | | ||| ||||||||||||| |||||||||||| |||||      
T  7681 atacattgtatgtctcttcgaaaaaataaatacattgtatatcattggaaatacaaattcattagataccaccctaattaaagcaaatcaaaaaagttct 7582  T
Q  222 attcaaatg 230  Q
    |||||||||    
T  7581 attcaaatg 7573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 123 - 230
Target Start/End: Complemental strand, 21135 - 21027
Alignment:
Q  123 atacattatatatctcttc-aaaaaacaaatacattgtatatcattggaaatataaaatgagtagctaccaccctaatttaagcaaatcaaacaagttta 221  Q
    ||||||| ||| ||||||| |||||| |||||||||||||||||||||||||| ||| | | ||| ||||||||||||| |||||||||||| |||||      
T  21135 atacattgtatgtctcttcgaaaaaataaatacattgtatatcattggaaatacaaattcattagataccaccctaattaaagcaaatcaaaaaagttct 21036  T
Q  222 attcaaatg 230  Q
    |||||||||    
T  21035 attcaaatg 21027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 351
Target Start/End: Complemental strand, 7547 - 7432
Alignment:
Q  231 cacatcgtttgtcaactacattgaatatctgaccagccaagccctctagaaaagctcatctccccttagcttgcagcaaccataagtgcaaactattccc 330  Q
    |||||||| ||||||| |||| |||| |||||||||||     ||  |||| ||| | |||||| | | ||||||||||||||||||||||||||| |||    
T  7547 cacatcgtatgtcaaccacatcgaatctctgaccagcc-----ctagagaagagcacgtctcccttgaacttgcagcaaccataagtgcaaactatgccc 7453  T
Q  331 agcagcgtgtatatactgaac 351  Q
    ||||||  ||||| |||||||    
T  7452 agcagcacgtatagactgaac 7432  T

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Target: scaffold0209; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 351
Target Start/End: Complemental strand, 21001 - 20886
Alignment:
Q  231 cacatcgtttgtcaactacattgaatatctgaccagccaagccctctagaaaagctcatctccccttagcttgcagcaaccataagtgcaaactattccc 330  Q
    |||||||| ||||||| |||| |||| |||||||||||     ||  |||| ||| | |||||| | | ||||||||||||||||||||||||||| |||    
T  21001 cacatcgtatgtcaaccacatcgaatctctgaccagcc-----ctagagaagagcacgtctcccttgaacttgcagcaaccataagtgcaaactatgccc 20907  T
Q  331 agcagcgtgtatatactgaac 351  Q
    ||||||  ||||| |||||||    
T  20906 agcagcacgtatagactgaac 20886  T

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Target: scaffold0209; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 441
Target Start/End: Complemental strand, 7369 - 7305
Alignment:
Q  377 agcgacaaagttagacaaaatttgagtcagtggggatgccaatatgtaacaaggaaacgaaaatt 441  Q
    |||||||||||| | |||||||||||||||| ||  ||||| ||||||||| | |||| ||||||    
T  7369 agcgacaaagtttggcaaaatttgagtcagttggactgccattatgtaacaggaaaacaaaaatt 7305  T

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Target: scaffold0209; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 441
Target Start/End: Complemental strand, 20823 - 20759
Alignment:
Q  377 agcgacaaagttagacaaaatttgagtcagtggggatgccaatatgtaacaaggaaacgaaaatt 441  Q
    |||||||||||| | |||||||||||||||| ||  ||||| ||||||||| | |||| ||||||    
T  20823 agcgacaaagtttggcaaaatttgagtcagttggactgccattatgtaacaggaaaacaaaaatt 20759  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 67 - 136
Target Start/End: Complemental strand, 33153603 - 33153533
Alignment:
Q  67 atattttatttcaaagatttcaacaa-gctaaaattgatagataatgaaaagaacaaatacattatatatc 136  Q
    |||||| ||||||||||||||||||| ||||||||||||  |||||||||| |||||||||||||||||||    
T  33153603 atatttaatttcaaagatttcaacaatgctaaaattgatccataatgaaaataacaaatacattatatatc 33153533  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 146 - 362
Target Start/End: Complemental strand, 33153551 - 33153343
Alignment:
Q  146 aacaaatacattgtatatcattggaaatataaaatgagtagctaccaccctaatttaagcaaatcaaacaagtttaattcaaatg---cacatcgtttgt 242  Q
    |||||||||||| |||||||||| ||||||||||||||||            ||||||||||||||||||| |||||||||| ||   |||||  | |||    
T  33153551 aacaaatacattatatatcattgaaaatataaaatgagta------------atttaagcaaatcaaacaaatttaattcaactgacacacattatatgt 33153464  T
Q  243 caactacattgaatatctgaccagccaagccctcta--gaaaagctcatctccccttagcttgcagcaaccataagtgcaaactattcccagcagcgtgt 340  Q
    |||||||| |||||   | || | ||| || |||||  ||| |||||||||||||| | |||| |||||||||||| |||||||||  ||| || ||  |    
T  33153463 caactacagtgaatcattcactaacca-gctctctatagaagagctcatctcccctgaacttgaagcaaccataagcgcaaactataaccaacaacgcat 33153365  T
Q  341 atatactgaacaggtgactttg 362  Q
    ||||||||||| ||||| ||||    
T  33153364 atatactgaacgggtgattttg 33153343  T

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Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 8353546 - 8353642
Alignment:
Q  18 atgttactcaatggtgaagactaggtagatcaatcagtaaaacatttatatattttatttcaaagatttcaacaagctaaaattgatagataatgaaa 115  Q
    |||||||| ||| ||||| |||||||||||||||| || |||||| || |||||| |||   ||||||||||||||||||||||||| ||||||||||    
T  8353546 atgttactgaatagtgaa-actaggtagatcaatctgttaaacatctagatatttgattaataagatttcaacaagctaaaattgattgataatgaaa 8353642  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 2549523 - 2549566
Alignment:
Q  18 atgttactcaatggtgaagactaggtagatcaatcagtaaaaca 61  Q
    |||||||| ||| |||||||||||||||| ||||||||||||||    
T  2549523 atgttactgaatagtgaagactaggtagaacaatcagtaaaaca 2549566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 8572948 - 8572905
Alignment:
Q  18 atgttactcaatggtgaagactaggtagatcaatcagtaaaaca 61  Q
    |||||||| ||| ||||||||| |||||||||||||||||||||    
T  8572948 atgttacttaatagtgaagactgggtagatcaatcagtaaaaca 8572905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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