View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18860_low_2 (Length: 360)
Name: NF18860_low_2
Description: NF18860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18860_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 72 - 340
Target Start/End: Complemental strand, 48739233 - 48738968
Alignment:
| Q |
72 |
ctataaattatcattaactaatttatgttctataggttcatttgttatcaactaatttatcttatgcatgtgattttctacagcaaatagaatcaaccac |
171 |
Q |
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| T |
48739233 |
ctataaattatcattaactaatttatgttctataggttcatttgttatcaactaatttatcttatgcatgtgattttctac--caaatagaatcaaccac |
48739136 |
T |
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| Q |
172 |
aaaagtttgatcaactgattaatcgtgtttctttcatgtattgatcagattaaatttttgtattagagatagccagtctttaaatttggagtgtaagatt |
271 |
Q |
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| T |
48739135 |
aaaagtttgatcaactgattaatcgtgtttctttcatgtattgatcaaattaaatttttgtattagagatagccagtc-ttaaatttggagtgtaagatt |
48739037 |
T |
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| Q |
272 |
actgttggactcatttaattattagctatgtataacattgcttttggttataacatatagtatacgcac |
340 |
Q |
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| T |
48739036 |
accgttggactcatttaattattagctatgtataacattgcttttggttataacatatagtatacgcac |
48738968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 48739498 - 48739448
Alignment:
| Q |
11 |
ttatacttatcaattcatttaggtgctaatcatcgtaaatacttaaattca |
61 |
Q |
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| T |
48739498 |
ttatacttatcaattcatttagctgctaatcatcgtaaatacttaaattca |
48739448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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