View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18860_low_5 (Length: 248)
Name: NF18860_low_5
Description: NF18860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18860_low_5 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 248
Target Start/End: Original strand, 47906966 - 47907201
Alignment:
| Q |
13 |
attaccagactcatagacaccactaataatttaagaaaatgaaagttattgaatgaaaatatgtaagtgataactccccagccctnnnnnnnttgcatgc |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
47906966 |
attaccagactcatagacaccactaataatttaagaaaatgaaagttattgaatgaaaatatgtaagtgataactccccagccctaaaaaaattgcatgc |
47907065 |
T |
|
| Q |
113 |
aaaactaaaacgcaatgccgttgacaggtatcagacaacatacatgtcttcaatctgaagtacccgtactacctagattaagtctcaactcaatccaacc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
47907066 |
aaaactaaaacgcaatgccgttgacaggtatcagacaacatacatgtcttcaatctgaagtatccgtactacctggattaagtctcaactcaatccaacc |
47907165 |
T |
|
| Q |
213 |
tggctcatatgaataaagcatagctaatgaatattc |
248 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |
|
|
| T |
47907166 |
tggctcatatgaataaagcatagcaaatgaatattc |
47907201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 12170589 - 12170632
Alignment:
| Q |
24 |
catagacaccactaataatttaagaaaatgaaagttattgaatg |
67 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||| |||||||| |
|
|
| T |
12170589 |
catagacaccaataataatttaagaaaataaaagtgattgaatg |
12170632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 12415017 - 12415060
Alignment:
| Q |
24 |
catagacaccactaataatttaagaaaatgaaagttattgaatg |
67 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||| |||||||| |
|
|
| T |
12415017 |
catagacaccaataataatttaagaaaataaaagtgattgaatg |
12415060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 30585162 - 30585121
Alignment:
| Q |
26 |
tagacaccactaataatttaagaaaatgaaagttattgaatg |
67 |
Q |
| |
|
||||||| | ||||||||||||||||||||||| |||||||| |
|
|
| T |
30585162 |
tagacactaataataatttaagaaaatgaaagtgattgaatg |
30585121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 43434512 - 43434552
Alignment:
| Q |
26 |
tagacaccactaataatttaagaaaatgaaagttattgaat |
66 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
43434512 |
tagacaccgataataatttaagaaaatgaaagtgattgaat |
43434552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 3963553 - 3963521
Alignment:
| Q |
26 |
tagacaccactaataatttaagaaaatgaaagt |
58 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |
|
|
| T |
3963553 |
tagacaccaataataatttaagaaaatgaaagt |
3963521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 2642964 - 2642912
Alignment:
| Q |
16 |
accagactcatagacaccactaataatttaa-gaaaatgaaagttattgaatg |
67 |
Q |
| |
|
||||||| |||||| |||| ||||||||||| |||||||||||| |||||||| |
|
|
| T |
2642964 |
accagacacatagataccagtaataatttaaagaaaatgaaagtgattgaatg |
2642912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University