View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18861_high_2 (Length: 441)
Name: NF18861_high_2
Description: NF18861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18861_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 229 - 424
Target Start/End: Complemental strand, 12615797 - 12615594
Alignment:
| Q |
229 |
gcttacttattcaacaacttagccaatttctatctgctcccactagactttactatcatattatgcatgtagagtactcatatttgaagaatagttctgg |
328 |
Q |
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| T |
12615797 |
gcttacttattcaacaacttagccaatttctatctgctcccactagactttactatc--attctgcatgtagagtactcatatttgaagaatagttctgg |
12615700 |
T |
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| Q |
329 |
taaagaccta----------nnnnnnnatatcttcatctctacaacttattgggatccacttatgtcgattacgttgattgtgttgacaccaaaaggtct |
418 |
Q |
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| T |
12615699 |
taaagacctattttttttatatcttcaaaatcttcatctctacaacttattgggatccacttatgtagattacgttgattgtgttgacaccaaaaggtct |
12615600 |
T |
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| Q |
419 |
agcatt |
424 |
Q |
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|||||| |
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| T |
12615599 |
agcatt |
12615594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 47086372 - 47086429
Alignment:
| Q |
68 |
tcatggcattcggcctaaaaatttcgacatcttttttcagttgacctaagacttatgga |
126 |
Q |
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| T |
47086372 |
tcatggcatccggcctaacaatttcgacat-ttttgtcagttgagctaggacttatgga |
47086429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 46715761 - 46715804
Alignment:
| Q |
67 |
gtcatggcattcggcctaaaaatttcgacatcttttttcagttga |
111 |
Q |
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| T |
46715761 |
gtcatggcattctgcctaacaatttcgacat-ttttttcagttga |
46715804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 43904566 - 43904609
Alignment:
| Q |
67 |
gtcatggcattcggcctaaaaatttcgacatcttttttcagttga |
111 |
Q |
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| T |
43904566 |
gtcatggcatccggcctaacaatttcgacat-ttttttcagttga |
43904609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 8050532 - 8050481
Alignment:
| Q |
74 |
cattcggcctaaaaatttcgacatcttttttcagttgacctaagacttatgga |
126 |
Q |
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| T |
8050532 |
cattcggcctaacaatttcgacat-ttttgtcggttgagctaagacttatgga |
8050481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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