View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18861_low_3 (Length: 240)
Name: NF18861_low_3
Description: NF18861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18861_low_3 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 4338477 - 4338698
Alignment:
| Q |
19 |
aagatttctttatgccaagttattagttttcctcatacaatggtttactaagcattcaacctttaattttctttcaggtctccaaatcaataaactgtga |
118 |
Q |
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| T |
4338477 |
aagatttctttatgccaagttattagttttcctcatacaatggtttactaagcattcaacctttaattttctttcaggtctccaaatcaataaactgtga |
4338576 |
T |
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| Q |
119 |
gagagactgggttttgacatgtgatataacatattcatagaaatagaacgaagaaaagttatagcaactctcactctaacacttcattggatgaatttca |
218 |
Q |
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| T |
4338577 |
gagagactgggttttgatatgtgatataacatattcatagaaatagaacgaagaaaagttatagcaactctcactctaacacttcattggatgaatttca |
4338676 |
T |
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| Q |
219 |
tgaagggttcaacgcattatat |
240 |
Q |
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| T |
4338677 |
tgaagggttcaacgcattatat |
4338698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 113
Target Start/End: Complemental strand, 4318561 - 4318475
Alignment:
| Q |
28 |
ttatgccaagttattagttttcctcatacaatggtttactaagc-attcaacctttaattttctttcaggtctccaaatcaataaac |
113 |
Q |
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| T |
4318561 |
ttatgctaagtttttggtttttctcatacagtggtttactaagccattcaatcttttattttctttcaggtctccaaaccaataaac |
4318475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 120
Target Start/End: Original strand, 4364340 - 4364435
Alignment:
| Q |
28 |
ttatgccaagttattagttttcctcatacaatgg--tttactaag-cattcaacctttaattttctttcaggtctccaaatcaataaactgtgaga |
120 |
Q |
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| T |
4364340 |
ttatgcgaagttttgagttttcctcatagagtggcgtttactaagacattcaatctttaattttctttcaggtcttcaaagcaataaactgggaga |
4364435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 124
Target Start/End: Original strand, 4347914 - 4347993
Alignment:
| Q |
46 |
tttcctcatacaatggtttactaagc-attcaacctttaattttctttcaggtctccaaatcaataaactgtgagagaga |
124 |
Q |
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| T |
4347914 |
tttcgtcaaacagtggtttactaagccatttaatctttaattttctttctggtcttcaaagcaataaaatgagagagaga |
4347993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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