View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18862_high_3 (Length: 239)
Name: NF18862_high_3
Description: NF18862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18862_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 68 - 225
Target Start/End: Complemental strand, 37837011 - 37836854
Alignment:
| Q |
68 |
acttttggagtaaaatagatatgagtggcgtaaatttgatgtgacaatgatgaaccatagtttcttgatcgagtaatctagtggttgaaattcatttttt |
167 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
37837011 |
acttttggagtaaaatatatatgagtggcgtaaatttgatgtgacaatgatgaaccatagtttcttgatcaagtaatctagtagttgaaattcatttttt |
37836912 |
T |
|
| Q |
168 |
aaaatgaataaattggatgtttagagttcgaattccgatccctacatataacaatatg |
225 |
Q |
| |
|
|| |||||||||| | |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
37836911 |
aaggtgaataaattaggtgtttagagttcgaattctgatccctacatataacaatatg |
37836854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 222
Target Start/End: Complemental strand, 41004633 - 41004566
Alignment:
| Q |
155 |
aaattcattttttaaaatgaataaattggatgtttagagttcgaattccgatccctacatataacaat |
222 |
Q |
| |
|
||||||||||||||| | |||||||||| ||||||||||| ||||| ||| ||||||||||||||| |
|
|
| T |
41004633 |
aaattcattttttaaggtaaataaattgggtgtttagagtttgaatttcgacgcctacatataacaat |
41004566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 222
Target Start/End: Complemental strand, 26818074 - 26818008
Alignment:
| Q |
156 |
aattcattttttaaaatgaataaattggatgtttagagttcgaattccgatccctacatataacaat |
222 |
Q |
| |
|
||||||||||||||| ||||||||| || |||| | |||||| | ||||| |||||||||||||||| |
|
|
| T |
26818074 |
aattcattttttaaagtgaataaatagggtgttcaaagttcgtagtccgacccctacatataacaat |
26818008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 218
Target Start/End: Complemental strand, 22854708 - 22854629
Alignment:
| Q |
138 |
gagtaatctagtggttgaaattcattttttaaaatgaataaattggatgtttagagttcgaattccgatccctacatataa |
218 |
Q |
| |
|
||||| ||||||||||| ||||||| ||||||| ||||||||| |||||||| | ||| ||| ||||| |||| ||||||| |
|
|
| T |
22854708 |
gagtagtctagtggttggaattcat-ttttaaagtgaataaatgggatgtttggggtttgaagtccgacccctgcatataa |
22854629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 223
Target Start/End: Complemental strand, 43327100 - 43327039
Alignment:
| Q |
162 |
ttttttaaaatgaataaattggatgtttagagttcgaattccgatccctacatataacaata |
223 |
Q |
| |
|
||||||||||||||||| | |||||||||| ||||||| | ||| |||| |||||||||||| |
|
|
| T |
43327100 |
ttttttaaaatgaataagtgggatgtttagggttcgaacttcgacccctgcatataacaata |
43327039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 222
Target Start/End: Original strand, 34870262 - 34870346
Alignment:
| Q |
139 |
agtaatctagtggttgaaattca-ttttttaaaatgaataaattggatgtttagagttcgaattccgatccctacatataacaat |
222 |
Q |
| |
|
||||||||||||||| ||||||| ||||| ||||||||||| | |||| | || ||||||| ||||| |||| ||||||||||| |
|
|
| T |
34870262 |
agtaatctagtggttaaaattcactttttcaaaatgaataagtgggatatatatggttcgaactccgacccctgcatataacaat |
34870346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 26321754 - 26321807
Alignment:
| Q |
146 |
tagtggttgaaattcattttttaaaatgaataaattggatgtttagagttcgaa |
199 |
Q |
| |
|
|||||||| ||||| |||||||||| |||||||||||| |||| || ||||||| |
|
|
| T |
26321754 |
tagtggttaaaatttattttttaaagtgaataaattgggtgttcagggttcgaa |
26321807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 187
Target Start/End: Complemental strand, 33536333 - 33536290
Alignment:
| Q |
144 |
tctagtggttgaaattcattttttaaaatgaataaattggatgt |
187 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
33536333 |
tctagtggttgaaattcaccttataaaatgaataaattggatgt |
33536290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University